Cleanup code using ruff linter and formatter #1131

	# Modified from GitHub Actions template

	name: Pytest

	# Improves reproducibility and speed
	env:
	OPENBLAS_NUM_THREADS: 1

	on:
	push:
	branches: [master]
	pull_request:
	branches: [master]

	jobs:
	test:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.11"]
	steps:
	- uses: actions/checkout@v2
	- name: Setup Python ${{ matrix.python-version }}
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	pip install --upgrade pip wheel
	pip install numpy
	pip install Cython
	pip install -r requirements.txt
	- name: Setup
	run: \|
	python setup.py install
	- name: Compile Cython components
	run: \|
	make clean compile
	- name: Test with pytest
	run: \|
	python -m pytest --cov=ecoli --durations=0 -m 'not (noci or master)'

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