Remove molecules at same coordinates as replisomes #1289

	# Modified from GitHub Actions template

	name: QA

	on:
	push:
	branches: [master]
	pull_request:
	branches: [master]

	jobs:
	Pytest:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v2
	- name: Install uv
	uses: astral-sh/setup-uv@v4
	with:
	enable-cache: true
	version: "0.5.7"
	- name: Install model
	run: USE_CYTHON=1 uv sync --frozen --extra dev
	- name: Test with pytest
	run: \|
	uv run --env-file .env pytest --cov-report xml:cov.xml --cov=ecoli --cov=reconstruction --cov=wholecell --cov=runscripts --durations=0
	- name: Code Coverage Report
	uses: irongut/[email protected]
	with:
	filename: cov.xml
	format: markdown
	indicators: true
	output: both
	- name: Add Coverage PR Comment
	uses: marocchino/sticky-pull-request-comment@v2
	if: github.event_name == 'pull_request'
	with:
	recreate: true
	path: code-coverage-results.md
	Mypy:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v2
	- name: Install uv
	uses: astral-sh/setup-uv@v4
	with:
	enable-cache: true
	version: "0.5.7"
	- name: Install model
	run: USE_CYTHON=1 uv sync --frozen --extra dev
	- name: Mypy
	run: \|
	uv run --env-file .env mypy
	Lint:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v2
	- name: Install uv
	uses: astral-sh/setup-uv@v4
	with:
	enable-cache: true
	version: "0.5.7"
	- name: Install model
	run: USE_CYTHON=1 uv sync --frozen --extra dev
	- name: Ruff
	run: \|
	uv run --env-file .env ruff check doc ecoli migration wholecell runscripts validation reconstruction

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