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CU-8695vnd6h Update to MedCAT 1.13 #27

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Sep 30, 2024
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CU-8695vnd6h Update to MedCAT 1.13 #27

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5ae3ed7
CU-8695vnd6h: Update requirement to medcat 1.13
mart-r Sep 18, 2024
2a03854
CU-8695vnd6h: Update installs in notebooks to medcat 1.13
mart-r Sep 18, 2024
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2 changes: 1 addition & 1 deletion notebooks/introductory/Part_1_1_OPTIONAL_Logging_With_MedCAT.html
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Expand Up @@ -13095,7 +13095,7 @@ <h1 id="MedCAT-tutorial---logging-with-MedCAT">MedCAT tutorial - logging with Me
<div class="inner_cell">
<div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># Install medcat</span>
<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.12.0
<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.13.0
<span class="k">try</span><span class="p">:</span>
<span class="kn">from</span> <span class="nn">medcat.cat</span> <span class="kn">import</span> <span class="n">CAT</span>
<span class="k">except</span><span class="p">:</span>
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2 changes: 1 addition & 1 deletion notebooks/introductory/Part_1_1_OPTIONAL_Logging_With_MedCAT.ipynb
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Expand Up @@ -19,7 +19,7 @@
"outputs": [],
"source": [
"# Install medcat\n",
"! pip install medcat~=1.12.0\n",
"! pip install medcat~=1.13.0\n",
"try:\n",
" from medcat.cat import CAT\n",
"except:\n",
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2 changes: 1 addition & 1 deletion notebooks/introductory/Part_3_1_Building_a_Concept_Database_and_Vocabulary.html
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Expand Up @@ -13099,7 +13099,7 @@ <h3 id="First-we-need-to-install-MedCAT">First we need to install MedCAT<a class
<div class="inner_cell">
<div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># Install MedCAT</span>
<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.12.0
<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.13.0
<span class="c1"># Get the scispacy model</span>
<span class="o">!</span> python -m spacy download en_core_web_md
<span class="k">try</span><span class="p">:</span>
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2 changes: 1 addition & 1 deletion notebooks/introductory/Part_3_1_Building_a_Concept_Database_and_Vocabulary.ipynb
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Expand Up @@ -322,7 +322,7 @@
],
"source": [
"# Install MedCAT\n",
"! pip install medcat~=1.12.0\n",
"! pip install medcat~=1.13.0\n",
"# Get the scispacy model\n",
"! python -m spacy download en_core_web_md\n",
"try:\n",
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6 changes: 3 additions & 3 deletions notebooks/introductory/Part_3_2_Extracting_Diseases_from_Electronic_Health_Records.html
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Expand Up @@ -13092,7 +13092,7 @@ <h1 id="Now-let's-start-extracting-concepts-from-unstructured-text!">Now let's s
<div class="inner_cell">
<div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># Install medcat</span>
<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.12.0
<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.13.0
<span class="c1"># install seaborn</span>
<span class="o">!</span> pip install seaborn
<span class="k">try</span><span class="p">:</span>
Expand Down Expand Up @@ -14706,10 +14706,10 @@ <h2 id="Use-Multiprocessing">Use Multiprocessing<a class="anchor-link" href="#Us



<div id="32ee3419-be25-428c-a2b3-2371035ddec6"></div>
<div id="8d4dc075-1e4a-4520-bc59-043368d5e637"></div>
<div class="output_subarea output_widget_view ">
<script type="text/javascript">
var element = $('#32ee3419-be25-428c-a2b3-2371035ddec6');
var element = $('#8d4dc075-1e4a-4520-bc59-043368d5e637');
</script>
<script type="application/vnd.jupyter.widget-view+json">
{"model_id": "05b18c97da9d4d05b9280df006a5fb82", "version_major": 2, "version_minor": 0}
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2 changes: 1 addition & 1 deletion notebooks/introductory/Part_3_2_Extracting_Diseases_from_Electronic_Health_Records.ipynb
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Expand Up @@ -275,7 +275,7 @@
],
"source": [
"# Install medcat\n",
"! pip install medcat~=1.12.0\n",
"! pip install medcat~=1.13.0\n",
"# install seaborn\n",
"! pip install seaborn\n",
"try:\n",
Expand Down
2 changes: 1 addition & 1 deletion notebooks/introductory/Part_3_3_Model_technical_optimisations.html
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Expand Up @@ -13092,7 +13092,7 @@ <h1 id="Now-let's-look-at-ways-to-optimise-the-model-for-our-specific-use-case">
<div class="inner_cell">
<div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># Install medcat</span>
<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.12.0
<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.13.0
<span class="k">try</span><span class="p">:</span>
<span class="kn">from</span> <span class="nn">medcat.cat</span> <span class="kn">import</span> <span class="n">CAT</span>
<span class="k">except</span><span class="p">:</span>
Expand Down
2 changes: 1 addition & 1 deletion notebooks/introductory/Part_3_3_Model_technical_optimisations.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -165,7 +165,7 @@
],
"source": [
"# Install medcat\n",
"! pip install medcat~=1.12.0\n",
"! pip install medcat~=1.13.0\n",
"try:\n",
" from medcat.cat import CAT\n",
"except:\n",
Expand Down
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