CU-8695vnd6h: Update installs in notebooks to medcat 1.13

CogStack · Sep 18, 2024 · 2a03854 · 2a03854
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diff --git a/notebooks/introductory/Part_1_1_OPTIONAL_Logging_With_MedCAT.html b/notebooks/introductory/Part_1_1_OPTIONAL_Logging_With_MedCAT.html
@@ -13095,7 +13095,7 @@ <h1 id="MedCAT-tutorial---logging-with-MedCAT">MedCAT tutorial - logging with Me
 <div class="inner_cell">
     <div class="input_area">
 <div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># Install medcat</span>
-<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.12.0
+<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.13.0
 <span class="k">try</span><span class="p">:</span>
     <span class="kn">from</span> <span class="nn">medcat.cat</span> <span class="kn">import</span> <span class="n">CAT</span>
 <span class="k">except</span><span class="p">:</span>

diff --git a/notebooks/introductory/Part_1_1_OPTIONAL_Logging_With_MedCAT.ipynb b/notebooks/introductory/Part_1_1_OPTIONAL_Logging_With_MedCAT.ipynb
@@ -19,7 +19,7 @@
    "outputs": [],
    "source": [
     "# Install medcat\n",
-    "! pip install medcat~=1.12.0\n",
+    "! pip install medcat~=1.13.0\n",
     "try:\n",
     "    from medcat.cat import CAT\n",
     "except:\n",

diff --git a/notebooks/introductory/Part_3_1_Building_a_Concept_Database_and_Vocabulary.html b/notebooks/introductory/Part_3_1_Building_a_Concept_Database_and_Vocabulary.html
@@ -13099,7 +13099,7 @@ <h3 id="First-we-need-to-install-MedCAT">First we need to install MedCAT<a class
 <div class="inner_cell">
     <div class="input_area">
 <div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># Install MedCAT</span>
-<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.12.0
+<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.13.0
 <span class="c1"># Get the scispacy model</span>
 <span class="o">!</span> python -m spacy download en_core_web_md
 <span class="k">try</span><span class="p">:</span>

diff --git a/notebooks/introductory/Part_3_1_Building_a_Concept_Database_and_Vocabulary.ipynb b/notebooks/introductory/Part_3_1_Building_a_Concept_Database_and_Vocabulary.ipynb
@@ -322,7 +322,7 @@
    ],
    "source": [
     "# Install MedCAT\n",
-    "! pip install medcat~=1.12.0\n",
+    "! pip install medcat~=1.13.0\n",
     "# Get the scispacy model\n",
     "! python -m spacy download en_core_web_md\n",
     "try:\n",

diff --git a/notebooks/introductory/Part_3_2_Extracting_Diseases_from_Electronic_Health_Records.html b/notebooks/introductory/Part_3_2_Extracting_Diseases_from_Electronic_Health_Records.html
@@ -13092,7 +13092,7 @@ <h1 id="Now-let's-start-extracting-concepts-from-unstructured-text!">Now let's s
 <div class="inner_cell">
     <div class="input_area">
 <div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># Install medcat</span>
-<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.12.0
+<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.13.0
 <span class="c1"># install seaborn</span>
 <span class="o">!</span> pip install seaborn
 <span class="k">try</span><span class="p">:</span>
@@ -14706,10 +14706,10 @@ <h2 id="Use-Multiprocessing">Use Multiprocessing<a class="anchor-link" href="#Us
 
 
 
-<div id="32ee3419-be25-428c-a2b3-2371035ddec6"></div>
+<div id="8d4dc075-1e4a-4520-bc59-043368d5e637"></div>
 <div class="output_subarea output_widget_view ">
 <script type="text/javascript">
-var element = $('#32ee3419-be25-428c-a2b3-2371035ddec6');
+var element = $('#8d4dc075-1e4a-4520-bc59-043368d5e637');
 </script>
 <script type="application/vnd.jupyter.widget-view+json">
 {"model_id": "05b18c97da9d4d05b9280df006a5fb82", "version_major": 2, "version_minor": 0}

diff --git a/notebooks/introductory/Part_3_2_Extracting_Diseases_from_Electronic_Health_Records.ipynb b/notebooks/introductory/Part_3_2_Extracting_Diseases_from_Electronic_Health_Records.ipynb
@@ -275,7 +275,7 @@
    ],
    "source": [
     "# Install medcat\n",
-    "! pip install medcat~=1.12.0\n",
+    "! pip install medcat~=1.13.0\n",
     "# install seaborn\n",
     "! pip install seaborn\n",
     "try:\n",

diff --git a/notebooks/introductory/Part_3_3_Model_technical_optimisations.html b/notebooks/introductory/Part_3_3_Model_technical_optimisations.html
@@ -13092,7 +13092,7 @@ <h1 id="Now-let's-look-at-ways-to-optimise-the-model-for-our-specific-use-case">
 <div class="inner_cell">
     <div class="input_area">
 <div class=" highlight hl-ipython3"><pre><span></span><span class="c1"># Install medcat</span>
-<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.12.0
+<span class="o">!</span> pip install medcat~<span class="o">=</span><span class="m">1</span>.13.0
 <span class="k">try</span><span class="p">:</span>
     <span class="kn">from</span> <span class="nn">medcat.cat</span> <span class="kn">import</span> <span class="n">CAT</span>
 <span class="k">except</span><span class="p">:</span>

diff --git a/notebooks/introductory/Part_3_3_Model_technical_optimisations.ipynb b/notebooks/introductory/Part_3_3_Model_technical_optimisations.ipynb
@@ -165,7 +165,7 @@
    ],
    "source": [
     "# Install medcat\n",
-    "! pip install medcat~=1.12.0\n",
+    "! pip install medcat~=1.13.0\n",
     "try:\n",
     "    from medcat.cat import CAT\n",
     "except:\n",