Merge pull request #168 from CliMA/ck/fix_ci

Fix CI

.buildkite/JuliaProject.toml

@@ -0,0 +1,5 @@
+[extras]
+CUDA_Runtime_jll = "76a88914-d11a-5bdc-97e0-2f5a05c973a2"
+
+[preferences.CUDA_Runtime_jll]
+version = "local"

.buildkite/pipeline.yml

@@ -1,51 +1,37 @@
+agents:
+  queue: central
+  slurm_mem: 8G
+  modules: julia/1.9.3 cuda/12.2
+
 env:
   JULIA_VERSION: "1.9.3"
   OPENBLAS_NUM_THREADS: 1
-  CUDA_VERSION: "10.2"
-  JULIA_PKG_SERVER: ""
+  CUDA_VERSION: "12.2"
+  OMPI_MCA_opal_warn_on_missing_libcuda: 0
+  JULIA_CPU_TARGET: 'broadwell;skylake'
 
 steps:
-  - label: "init cpu environment :computer:"
-    key: "init_cpu_env"
+  - label: "init environment :computer:"
+    key: "init_env"
     command:
-      - "julia --project=test -e 'using Pkg; Pkg.develop(path=\".\")'"
-      - "julia --project=test -e 'using Pkg; Pkg.instantiate(;verbose=true)'"
-      - "julia --project=test -e 'using Pkg; Pkg.resolve()'"
-      - "julia --project=test -e 'using Pkg; Pkg.precompile()'"
-      - "julia --project=test -e 'using Pkg; Pkg.status()'"
+      - echo "--- Instantiate test env"
+      - julia --project=test -e 'using Pkg; Pkg.develop(path="."); Pkg.instantiate(;verbose=true); Pkg.precompile(;strict=true); Pkg.status()'
 
-      - "julia --project=perf -e 'using Pkg; Pkg.develop(path=\".\")'"
-      - "julia --project=perf -e 'using Pkg; Pkg.instantiate(;verbose=true)'"
-      - "julia --project=perf -e 'using Pkg; Pkg.resolve()'"
-      - "julia --project=perf -e 'using Pkg; Pkg.precompile()'"
-      - "julia --project=perf -e 'using Pkg; Pkg.status()'"
-    agents:
-      config: cpu
-      queue: central
-      slurm_ntasks: 1
+      - echo "--- Instantiate perf env"
+      - julia --project=perf -e 'using Pkg; Pkg.develop(path="."); Pkg.instantiate(;verbose=true); Pkg.precompile(;strict=true); Pkg.status()'
 
-  - label: "init gpu environment :computer:"
-    key: "init_gpu_env"
-    command:
-      - "julia --project=gpuenv -e 'using Pkg; Pkg.develop(path=\".\")'"
-      - "julia --project=gpuenv -e 'using Pkg; Pkg.instantiate(;verbose=true)'"
-      - "julia --project=gpuenv -e 'using Pkg; Pkg.resolve()'"
-      - "julia --project=gpuenv -e 'using Pkg; Pkg.precompile()'"
-      - "julia --project=gpuenv -e 'using Pkg; Pkg.status()'"
+      - echo "--- Instantiate gpu env"
+      - julia --project=gpuenv -e 'using Pkg; Pkg.develop(path="."); Pkg.instantiate(;verbose=true); Pkg.precompile(;strict=true); using CUDA; CUDA.precompile_runtime(); Pkg.status()'
     agents:
-      config: gpu
-      queue: central
       slurm_ntasks: 1
-      slurm_gres: "gpu:1"
+      slurm_gpus: 1
 
   - wait
 
   - label: "CPU tests"
     command:
       - "julia --project=test test/runtests.jl"
     agents:
-      config: cpu
-      queue: central
       slurm_ntasks: 1
     timeout_in_minutes: 60
 
@@ -55,63 +41,49 @@ steps:
     artifact_paths:
       - "perf/allocations_output/*"
     agents:
-      config: cpu
-      queue: central
       slurm_ntasks: 1
     timeout_in_minutes: 60
 
   - label: ":mag::rocket: Constructor benchmarks"
     command:
       - "julia --project=perf perf/benchmark.jl"
     agents:
-      config: cpu
-      queue: central
       slurm_ntasks: 1
     timeout_in_minutes: 60
 
   - label: ":mag::rocket: Constructor micro-benchmarks"
     command:
       - "julia --project=perf perf/microbenchmarks.jl"
     agents:
-      config: cpu
-      queue: central
       slurm_ntasks: 1
     timeout_in_minutes: 60
 
   - label: ":mag::rocket: Constructor flop measurements"
     command:
       - "julia --project=perf perf/flops.jl"
     agents:
-      config: cpu
-      queue: central
       slurm_ntasks: 1
     timeout_in_minutes: 60
 
   - label: ":mag::rocket: JET tests"
     command:
       - "julia --project=perf perf/jet.jl"
     agents:
-      config: cpu
-      queue: central
       slurm_ntasks: 1
     timeout_in_minutes: 60
 
   - label: "KernelAbstraction GPU tests"
     command:
       - "julia --project=gpuenv test/runtests_gpu.jl CuArray"
     agents:
-      config: gpu
-      queue: central
       slurm_ntasks: 1
-      slurm_gres: "gpu:1"
+      slurm_gpus: 1
     timeout_in_minutes: 60
 
   - label: "KernelAbstraction CPU tests"
     command:
       - "julia --project=gpuenv test/runtests_gpu.jl"
     agents:
-      config: gpu # we control CPU/GPU flag in script
-      queue: central
       slurm_ntasks: 1
-      slurm_gres: "gpu:1"
+      slurm_gpus: 1
     timeout_in_minutes: 60

docs/make.jl

@@ -34,10 +34,9 @@ format = Documenter.HTML(
     collapselevel = 1,
 )
 
-makedocs(
-    bib,
+makedocs(;
+    plugins = [bib],
     sitename = "Thermodynamics.jl",
-    strict = true,
     format = format,
     checkdocs = :exports,
     clean = true,

docs/src/DevDocs.md

@@ -35,14 +35,10 @@ include("saturation_adjustment.jl")
 :-----------------:|:-----------------:|:---------------------:
 SecantMethod | ![](3DSpace_converged_SecantMethod.svg)       |  ![](3DSpace_non_converged_SecantMethod.svg)
 NewtonsMethod | ![](3DSpace_converged_NewtonsMethod.svg)      |  ![](3DSpace_non_converged_NewtonsMethod.svg)
-NewtonsMethodAD | ![](3DSpace_converged_NewtonsMethodAD.svg)    |  ![](3DSpace_non_converged_NewtonsMethodAD.svg)
-RegulaFalsiMethod | ![](3DSpace_converged_RegulaFalsiMethod.svg)  |  ![](3DSpace_non_converged_RegulaFalsiMethod.svg)
 
 ## 2D slices, binned by total specific humidity
 
 | Numerical method  | Converged  |  Non-converged |
 :-----------------:|:-----------------:|:---------------------:
 SecantMethod | ![](2DSlice_converged_SecantMethod.svg)  |  ![](2DSlice_non_converged_SecantMethod.svg)
 NewtonsMethod | ![](2DSlice_converged_NewtonsMethod.svg)  |  ![](2DSlice_non_converged_NewtonsMethod.svg)
-NewtonsMethodAD | ![](2DSlice_converged_NewtonsMethodAD.svg)  |  ![](2DSlice_non_converged_NewtonsMethodAD.svg)
-RegulaFalsiMethod | ![](2DSlice_converged_RegulaFalsiMethod.svg)  |  ![](2DSlice_non_converged_RegulaFalsiMethod.svg)