Update README.md

README.md

@@ -10,22 +10,22 @@ Use gcj compiler to compile the program from the code source. To create the bina
 ## USAGE ##
 Launch eFASTA without arguments to read the documentation.<br /> 
 
-USAGE: eFASTA \<options\><br />
+USAGE:<br />
+<code>eFASTA \<options\></code><br />
 <br />
+where options are:<br />
 <br />
-  where options are:<br />
-<br />
--fasta, -f \<infile\><br />
+<code>-fasta, -f \<infile\></code><br />
 (mandatory) FASTA-formatted nucleotide sequence file name<br />
 <br />
--coord, -c \<pattern:start-end\><br />
-(mandatory) DNA segment to extract from [infile] defined by the first FASTA header containing [pattern] and the region comprised  between nucleotide  indexes [start] and [end] (both inclusive); if [start] > [end], the extracted nucleotide segment is reverse-complemented (mandatory)<br />
+<code>-coord, -c \<pattern:start-end\></code><br />
+(mandatory) DNA segment to extract from [infile] defined by the first FASTA header containing [pattern] and the region comprised  between nucleotide indexes [start] and [end] (both inclusive); if [start] > [end], the extracted nucleotide segment is reverse-complemented<br />
 <br />
--outname, -o \<basename\><br />
-extracted nucleotide  segment is written  into the FASTA-formatted output file [basename].fna (default: "seq")<br />
+<code>-outname, -o \<basename\></code><br />
+extracted nucleotide segment is written into the FASTA-formatted output file [basename].fna (default: "seq")<br />
 <br />
--cds<br />
-to indicate  that the  extracted  DNA  segment is  a CDS, leading to  the writing  of its  amino  acid  translation (standard  genetic  code)  into a  second FASTA-formatted output file [basename].faa<br />
+<code>-cds</code><br />
+to indicate that the extracted  DNA segment is a CDS, leading to the writing of its amino acid translation (standard genetic code) into a second FASTA-formatted output file [basename].faa<br />
 <br />
--fcds<br />
-same as  option -cds  but to search for the full CDS that includes the specified region,  i.e. first occuring codon START before index [start]  and first occuring codon STOP after index [end]
+<code>-fcds</code><br />
+same as option -cds but to search for the full CDS that includes the specified region, i.e. first occuring codon START before index [start] and first occuring codon STOP after index [end]