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BrainLesion · Oct 9, 2024 · e230f5f · e230f5f
1 parent 0087236
commit e230f5f
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Showing 3 changed files with 34 additions and 6 deletions.
diff --git a/unit_tests/test_metrics.py b/unit_tests/test_metrics.py
@@ -97,7 +97,12 @@ def setUp(self) -> None:
     def test_rvd_case_simple_identical(self):
 
         pred_arr, ref_arr = case_simple_identical()
-        rvd = Metric.RVD(reference_arr=ref_arr, prediction_arr=pred_arr, ref_instance_idx=1, pred_instance_idx=1)
+        rvd = Metric.RVD(
+            reference_arr=ref_arr,
+            prediction_arr=pred_arr,
+            ref_instance_idx=1,
+            pred_instance_idx=1,
+        )
         self.assertEqual(rvd, 0.0)
 
     def test_rvd_case_simple_identical_idx(self):
@@ -139,7 +144,12 @@ def test_dsc_case_simple_identical(self):
     def test_dsc_case_simple_identical_idx(self):
 
         pred_arr, ref_arr = case_simple_identical()
-        dsc = Metric.DSC(reference_arr=ref_arr, prediction_arr=pred_arr, ref_instance_idx=1, pred_instance_idx=1)
+        dsc = Metric.DSC(
+            reference_arr=ref_arr,
+            prediction_arr=pred_arr,
+            ref_instance_idx=1,
+            pred_instance_idx=1,
+        )
         self.assertEqual(dsc, 1.0)
 
     def test_dsc_case_simple_nooverlap(self):
@@ -173,7 +183,12 @@ def test_st_case_simple_identical(self):
 
     def test_st_case_simple_identical_idx(self):
         pred_arr, ref_arr = case_simple_identical()
-        st = Metric.ASSD(reference_arr=ref_arr, prediction_arr=pred_arr, ref_instance_idx=1, pred_instance_idx=1)
+        st = Metric.ASSD(
+            reference_arr=ref_arr,
+            prediction_arr=pred_arr,
+            ref_instance_idx=1,
+            pred_instance_idx=1,
+        )
         self.assertEqual(st, 0.0)
 
     def test_st_case_simple_nooverlap(self):
@@ -204,7 +219,12 @@ def test_st_case_simple_identical(self):
 
     def test_st_case_simple_identical_idx(self):
         pred_arr, ref_arr = case_simple_identical()
-        st = Metric.clDSC(reference_arr=ref_arr, prediction_arr=pred_arr, ref_instance_idx=1, pred_instance_idx=1)
+        st = Metric.clDSC(
+            reference_arr=ref_arr,
+            prediction_arr=pred_arr,
+            ref_instance_idx=1,
+            pred_instance_idx=1,
+        )
         self.assertEqual(st, 1.0)
 
     def test_st_case_simple_nooverlap(self):

diff --git a/unit_tests/test_panoptic_pipeline.py b/unit_tests/test_panoptic_pipeline.py
@@ -9,7 +9,11 @@
 
 from panoptica import InputType
 from panoptica.instance_approximator import ConnectedComponentsInstanceApproximator
-from panoptica.instance_matcher import MaximizeMergeMatching, NaiveThresholdMatching, InstanceLabelMap
+from panoptica.instance_matcher import (
+    MaximizeMergeMatching,
+    NaiveThresholdMatching,
+    InstanceLabelMap,
+)
 from panoptica.metrics import Metric
 from panoptica.instance_evaluator import (
     evaluate_matched_instance,

diff --git a/unit_tests/test_utils.py b/unit_tests/test_utils.py
@@ -5,7 +5,11 @@
 import os
 import unittest
 import numpy as np
-from panoptica.utils.numpy_utils import _unique_without_zeros, _count_unique_without_zeros, _get_smallest_fitting_uint
+from panoptica.utils.numpy_utils import (
+    _unique_without_zeros,
+    _count_unique_without_zeros,
+    _get_smallest_fitting_uint,
+)
 from panoptica.utils.citation_reminder import citation_reminder