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Merge from original #14

Merged
merged 50 commits into from
Dec 13, 2023
Merged

Merge from original #14

merged 50 commits into from
Dec 13, 2023

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neuronflow
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sarthakpati and others added 30 commits December 11, 2023 20:01
@sarthakpati
added files from original repo
39f1e24
@sarthakpati
added setup but unsure how to convert these requirments to the toml f…
59ad77f 
…ormat
@sarthakpati
license updated to apache
ec16804
@sarthakpati
simplereg --> ereg
b5f4916
@sarthakpati
removed some imports
01a4eb1
@sarthakpati
added tests
c6ab5ef
@neuronflow
clean
114b9ae 
Signed-off-by: neuronflow <[email protected]>
@neuronflow
new: add requirements to toml, comment setup
649eb1f 
Signed-off-by: neuronflow <[email protected]>
@neuronflow
add TODO
51d5577 
Signed-off-by: neuronflow <[email protected]>
@neuronflow
new: add todo
972b745 
Signed-off-by: neuronflow <[email protected]>
@neuronflow
we get the version from toml
fd9a1b7 
Signed-off-by: neuronflow <[email protected]>
@neuronflow
clean imports
e9db8c0 
Signed-off-by: neuronflow <[email protected]>
@neuronflow
format imports
6820e7a 
Signed-off-by: neuronflow <[email protected]>
@neuronflow
new: add todo
1f86b00 
Signed-off-by: neuronflow <[email protected]>
@neuronflow
format
218de92 
Signed-off-by: neuronflow <[email protected]>
@sarthakpati
imports fixed
e7f467a
@neuronflow
add todo
a86c85d 
Signed-off-by: neuronflow <[email protected]>
@sarthakpati
updated cli description
dbc4dd0
@sarthakpati
Merge branch 'merge_from_original' of https://github.com/BrainLesion/…
f9efa6c 
…eReg into merge_from_original
@neuronflow
add todo
0059ed5 
Signed-off-by: neuronflow <[email protected]>
@neuronflow
heimat
14c968f 
Signed-off-by: neuronflow <[email protected]>
@neuronflow
add todo
94578ab 
Signed-off-by: neuronflow <[email protected]>
@neuronflow
utils
c9275be 
Signed-off-by: neuronflow <[email protected]>
@neuronflow
citation reminder
b4f0270 
Signed-off-by: neuronflow <[email protected]>
@neuronflow
ground work for citation reminder
4438b88 
Signed-off-by: neuronflow <[email protected]>
@neuronflow
rdme
444892d 
Signed-off-by: neuronflow <[email protected]>
@neuronflow
adjustment
df6a6d2 
Signed-off-by: neuronflow <[email protected]>
@neuronflow
moved tests
b804ad1 
Signed-off-by: neuronflow <[email protected]>
@neuronflow
fixes version problem
ed3386c 
Signed-off-by: neuronflow <[email protected]>
@neuronflow
we no longer collide with internal input
e4fea96 
Signed-off-by: neuronflow <[email protected]>
neuronflow and others added 20 commits December 12, 2023 09:12
@neuronflow
format
0cbc34b 
Signed-off-by: neuronflow <[email protected]>
@neuronflow
move tests
d169ea3 
Signed-off-by: neuronflow <[email protected]>
@neuronflow
revert, sorry :X
25d2a2c 
Signed-off-by: neuronflow <[email protected]>
@sarthakpati
updated tests
dc04960
@sarthakpati
updated ignore
197aab9
@sarthakpati
added data for unit tests
539c0a3
@sarthakpati
updated
4ab2c6d
@sarthakpati
no need for this (I had not seen the "unit_tests" folder)
7872d66
@sarthakpati
Add test_config.yaml to .gitignore
bee1d0a
@sarthakpati
Add log_file attribute to RegistrationClass
1a766e5
@sarthakpati
fixed api
bf1d553
@sarthakpati
Remove unnecessary line in optimizer_parameters
1b8ac7b
@sarthakpati
Add default optimizer parameters to registration class
2ec487b
@sarthakpati
Refactor optimizer parameters and handle self initialization
877ffca
@sarthakpati
Refactor registration class and add rigid registration option
5459391
@sarthakpati
Add support for passing config as a dictionary
dc13971 
Handle different types of config file inputs
@sarthakpati
Update file to only process .nii.gz files
69b83cc
@sarthakpati
Refactor unit tests and add registration function
ee8a552
@sarthakpati
Refactor unit tests and fix issues with test_main() function
a83ae8e
@sarthakpati
Merge branch 'main' of https://github.com/BrainLesion/eReg into merge…
8e598e7 
…_from_original
@neuronflow neuronflow merged commit 458332a into main Dec 13, 2023
3 of 4 checks passed
@neuronflow neuronflow deleted the merge_from_original branch December 13, 2023 15:00
@neuronflow neuronflow restored the merge_from_original branch December 13, 2023 15:28
@neuronflow
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@neuronflow @sarthakpati