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Fix codecov report in action and add codecov badge #11

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Nov 27, 2024
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Fix codecov report in action and add codecov badge #11

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5537d74
Fix codecov report in action and add codecov badge
MarcelRosier Nov 27, 2024
21200d4
Fix rtd badge link
MarcelRosier Nov 27, 2024
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2 changes: 1 addition & 1 deletion .github/workflows/tests.yml
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Expand Up @@ -39,7 +39,7 @@ jobs:
# TODO adapt package_name to the name of your package
- name: Test with pytest
run: |
python -m poetry run pytest --cov package_name
python -m poetry run pytest --cov deep_quality_estimation --cov-report=xml
# Add the following block to upload coverage to Codecov, requires a CODECOV_TOKEN secret to be set in the repository
# - name: Upload results to Codecov
# # Only upload to Codecov after a merge to the main branch
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6 changes: 3 additions & 3 deletions README.md
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Expand Up @@ -2,10 +2,10 @@

[![Python Versions](https://img.shields.io/pypi/pyversions/deep_quality_estimation)](https://pypi.org/project/deep_quality_estimation/)
[![Stable Version](https://img.shields.io/pypi/v/deep_quality_estimation?label=stable)](https://pypi.python.org/pypi/deep_quality_estimation/)
[![Documentation Status](https://readthedocs.org/projects/deep_quality_estimation/badge/?version=latest)](http://deep_quality_estimation.readthedocs.io/?badge=latest)
[![Documentation Status](https://readthedocs.org/projects/deep_quality_estimation/badge/?version=latest)](https://deep-quality-estimation.readthedocs.io/en/latest/)
[![tests](https://github.com/BrainLesion/deep_quality_estimation/actions/workflows/tests.yml/badge.svg)](https://github.com/BrainLesion/deep_quality_estimation/actions/workflows/tests.yml)
[![codecov](https://codecov.io/gh/BrainLesion/deep_quality_estimation/graph/badge.svg?token=A7FWUKO9Y4)](https://codecov.io/gh/BrainLesion/deep_quality_estimation)
[![License](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0)
<!-- [![codecov](https://codecov.io/gh/BrainLesion/deep_quality_estimation/graph/badge.svg?token=A7FWUKO9Y4)](https://codecov.io/gh/BrainLesion/deep_quality_estimation) -->

Quality prediction for brain tumor segmentation on a scale ranging from &#x2B50; 1 star to &#x2B50;&#x2B50;&#x2B50;&#x2B50;&#x2B50;&#x2B50; 6 stars inspired by the paper [**Deep Quality Estimation: Creating Surrogate Models for Human Quality Ratings**](https://arxiv.org/abs/2205.10355). <br>
This can be used to estimate the quality of a BraTS glioma segmentation for evaluation purposes or, e.g., as part of a loss function during model training.
Expand Down Expand Up @@ -61,7 +61,7 @@ mean_score, scores_per_view = dqe.predict(

## Citation

If you use deep_quality_estimation in your research, please cite it to support the development!
If you use `deep_quality_estimation` in your research, please cite it to support the development!

https://arxiv.org/abs/2205.10355
```
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