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dqe.ipynb

@@ -141,16 +141,18 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "#use case for data loader\n",
+    "# use case for data loader\n",
     "\n",
     "center_of_mass = compute_center_of_mass(gt_segmentation)\n",
     "\n",
-    "seg_slices = get_center_of_mass_slices(file=gt_segmentation, center_of_mass=center_of_mass)\n",
+    "seg_slices = get_center_of_mass_slices(\n",
+    "    file=gt_segmentation, center_of_mass=center_of_mass\n",
+    ")\n",
     "\n",
     "t1c_slices = get_center_of_mass_slices(file=t1c_file, center_of_mass=center_of_mass)\n",
     "t1_slices = get_center_of_mass_slices(file=t1_file, center_of_mass=center_of_mass)\n",
     "t2_slices = get_center_of_mass_slices(file=t2_file, center_of_mass=center_of_mass)\n",
-    "fla_slices = get_center_of_mass_slices(file=fla_file, center_of_mass=center_of_mass)\n"
+    "fla_slices = get_center_of_mass_slices(file=fla_file, center_of_mass=center_of_mass)"
    ]
   },
   {
@@ -197,7 +199,7 @@
    ],
    "source": [
     "for d in dicts:\n",
-    "    print(d[\"view\"], d.keys())  "
+    "    print(d[\"view\"], d.keys())"
    ]
   },
   {
@@ -252,7 +254,9 @@
     }
    ],
    "source": [
-    "ds = get_dataset(t1c=t1c_file, t1=t1_file, t2=t2_file, fla=fla_file, seg=gt_segmentation)\n",
+    "ds = get_dataset(\n",
+    "    t1c=t1c_file, t1=t1_file, t2=t2_file, fla=fla_file, seg=gt_segmentation\n",
+    ")\n",
     "for d in ds:\n",
     "    for k, v in d.items():\n",
     "        print(k, v.shape if not isinstance(v, View) else v)"
@@ -395,7 +399,9 @@
     }
    ],
    "source": [
-    "dl = get_data_loader(t1c=t1c_file, t1=t1_file, t2=t2_file, fla=fla_file, seg=gt_segmentation)\n",
+    "dl = get_data_loader(\n",
+    "    t1c=t1c_file, t1=t1_file, t2=t2_file, fla=fla_file, seg=gt_segmentation\n",
+    ")\n",
     "for batch in dl:\n",
     "    print(batch.keys())\n",
     "    print(batch[\"view\"])\n",
@@ -481,7 +487,7 @@
     "\n",
     "        # we compute it patch wise instead\n",
     "        outputs = model(inputs)\n",
-    "        \n",
+    "\n",
     "        results.append(outputs)"
    ]
   },