min_size_per_dim + changes for scalars inputs+outputs support#354

Merged

YoelShoshan merged 109 commits intomasterfrom yoels

Jul 26, 2024

+32-7

Commits on Apr 14, 2022

multiprocessing fix and helper func
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Commits on Jun 23, 2022

Merge branch 'fuse2' of https://github.com/IBM/fuse-med-ml into yoels
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Commits on Jun 27, 2022

path utilities and also moshikos change to solve hang on tests
Yoel Shoshan
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Commits on Jun 28, 2022

Merge branch 'fuse2' of https://github.com/IBM/fuse-med-ml into yoels
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Commits on Jul 7, 2022

PR comments implemented
Yoel Shoshan
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Merge branch 'fuse2' of https://github.com/IBM/fuse-med-ml into yoels
Yoel Shoshan
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Merge branch 'fuse2' into yoels
mosheraboh
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Commits on Jul 15, 2022

solved conflict
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Commits on Jul 30, 2022

path utils
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path utils
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Commits on Aug 3, 2022

Merge branch 'master' of https://github.com/IBM/fuse-med-ml into yoels
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Commits on Aug 4, 2022

changed default deepdiff behavior to ignore nans in comparison, added keys() items() and values() to our NDict, and tried to highlight more the faulting op in pipeline ops error
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solved static code analysis raised issues
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removed unreachable code in paths.py
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* Added "remove_extension" to path utils
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Commits on Sep 7, 2022

Merge branch 'master' of https://github.com/IBM/fuse-med-ml into yoels
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Commits on Sep 8, 2022

fixed a bug in head_1D_classifier
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Commits on Sep 13, 2022

added a lightweight mode of DatasetDefault that doesn't hold any sample_ids. fixed a typo in samplers.py and added a describe method to NDict
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Commits on Sep 14, 2022

Merge branch 'master' of https://github.com/IBM/fuse-med-ml into yoels
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fixing statically detected issues
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Commits on Sep 20, 2022

added simple function caching utility
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Commits on Sep 22, 2022

lite weight dataset default
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fixed static checkers
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Commits on Sep 29, 2022

fixed static code analysis related stuff
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code cleanup
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removed comments
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implemented PR comments
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Commits on Dec 8, 2022

added hints and better error messages for common mistakes when providing pipeline ops list
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merge and solved conflict
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linters etc.
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Commits on Jan 5, 2023

activation checkpointing
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Merge branch 'master' of https://github.com/IBM/fuse-med-ml into yoels
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Commits on Feb 10, 2023

activation checkpointing
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Commits on Feb 23, 2023

Merge branch 'master' of https://github.com/IBM/fuse-med-ml into yoels
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removed unneeded files
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Commits on Mar 6, 2023

Merge branch 'master' of https://github.com/IBM/fuse-med-ml into yoels
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added ability to ignore kwargs in function string descriptor building logic, and solved an issue in run_multiprocessed in verbose=0 case
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added support for maxtasksperchild in run_multiprocessed
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static code analysis based fixes
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Commits on Mar 22, 2023

multiprocessing related improvements
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static code checkers fixes
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added a utility to get available cpu cores num
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added simple but useful helper function to add prefix to file basename
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static code fixes
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fixed info message on num_available_cores
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Commits on Apr 3, 2023

num_available_cores works correctly now in distributed LSF/CCC setting as well now
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static code checkers fixes
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Commits on Apr 16, 2023

added a common op for replacing entities
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Merge branch 'master' of https://github.com/IBM/fuse-med-ml into yoels
yoel shoshan
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static code checkers
yoel shoshan
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Commits on Apr 20, 2023

Merge branch 'master' into yoels
mosheraboh
authored

Commits on May 24, 2023

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yoel shoshan
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Merge branch 'master' of https://github.com/IBM/fuse-med-ml into yoels
yoel shoshan
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Merge branch 'yoels' of https://github.com/BiomedSciAI/fuse-med-ml into yoels
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Commits on May 31, 2023

Merge branch 'master' of https://github.com/IBM/fuse-med-ml into yoels
yoel shoshan
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Commits on Jun 9, 2023

Merge branch 'master' of https://github.com/IBM/fuse-med-ml into yoels
yoel shoshan
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Commits on Jun 19, 2023

Merge branch 'master' of https://github.com/IBM/fuse-med-ml into yoels
yoel shoshan
committed

Commits on Jul 4, 2023

Merge branch 'master' of https://github.com/IBM/fuse-med-ml into yoels
yoel shoshan
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Commits on Jul 18, 2023

Merge branch 'master' of https://github.com/IBM/fuse-med-ml into yoels
yoel shoshan
committed

Commits on Jul 24, 2023

removed too user specific dir paths from hash input string
yoel shoshan
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Commits on Sep 6, 2023

Merge branch 'master' of https://github.com/IBM/fuse-med-ml into yoels
yoel shoshan
committed

Commits on Sep 10, 2023

Merge branch 'master' of https://github.com/IBM/fuse-med-ml into yoels
yoel shoshan
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Commits on Nov 19, 2023

address tuple in colate
michalozeryflato
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Commits on Nov 20, 2023

Merge branch 'collate_tuple' of https://github.com/IBM/fuse-med-ml into yoels
yoel shoshan
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Commits on Mar 5, 2024

Merge branch 'master' of https://github.com/IBM/fuse-med-ml into yoels
yoel shoshan
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Commits on Mar 17, 2024

Merge branch 'master' of https://github.com/IBM/fuse-med-ml into yoels
yoel shoshan
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Commits on Mar 31, 2024

collate now supports minimal dimension + added more support in samples cacher
yoel shoshan
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collate now supports minimal dimension + added more support in samples cacher
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Commits on Apr 3, 2024

PR comments
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added unit tests :)
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Commits on Apr 4, 2024

unit tests
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unit tests
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Commits on May 12, 2024

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Commits on May 16, 2024

interface validator
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Merge branch 'master' of https://github.com/IBM/fuse-med-ml into yoels
yoel shoshan
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PR comments
yoel shoshan
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PR comments
yoel shoshan
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fixing tests
yoel shoshan
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fixing tests
yoel shoshan
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Commits on May 19, 2024

min_size_per_dim
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allowing passing min_size_per_dim which is longer (end will be ignored)
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fixed exception logic
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Commits on May 22, 2024

allowing min_size_per_dim to have more elements than the tensor dimensions as it makes it easier for the user not requiring to provide it specifically per key name
yoel shoshan
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Commits on Jul 23, 2024

allowing None to be ignored in casting ops
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added support in perason correlation to samples of different sizes
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Commits on Jul 24, 2024

Merge branch 'master' of https://github.com/IBM/fuse-med-ml into yoels
yoel shoshan
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unittest shows that now perason correlation fails when the input is a list of raw floats, solved it
yoel shoshan
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Commits on Jul 26, 2024