Ukbb mri neck to knee ozery #155
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…eid_*_<visit>_0", since in kidney MRI there could be 2 zip files per patient
…-ml into ukbb_mri_neck_to_knee_ozery � Conflicts: � examples/fuse_examples/imaging/classification/ukbb_prostate/runner.py
…fuse-med-ml into ukbb_mri_neck_to_knee_ozery
…-ml into ukbb_mri_neck_to_knee_ozery
…to ukbb_mri_neck_to_knee_ozery � Conflicts: � examples/fuse_examples/imaging/classification/ukbb_prostate/cohort_and_label_def.py � examples/fuse_examples/imaging/classification/ukbb_prostate/conf/config_prostate_cancer.yaml � examples/fuse_examples/imaging/classification/ukbb_prostate/conf/config_prostatectomy.yaml � examples/fuse_examples/imaging/classification/ukbb_prostate/runner.py � fuseimg/datasets/ukbb_neck_to_knee.py
…fuse-med-ml into ukbb_mri_neck_to_knee_ozery
mosheraboh
requested changes
Aug 15, 2022
| @@ -40,6 +40,7 @@ def __init__( | |||
| dynamic_pipeline: Optional[PipelineDefault] = None, | |||
| cacher: Optional[SamplesCacher] = None, | |||
| allow_uncached_sample_morphing: bool = False, | |||
| always_return_dict = True, | |||
There was a problem hiding this comment.
let's changed the allow_uncached_sample_morphing to mode instead of boolean.
We can have a mode that goes over all the samples to filter Nones or to split samples.
And a mode that skips it and returns whatever the pipeline generates.
See if you can come up with good names for the argument and the modes.
| @@ -100,7 +100,7 @@ def _collect_values_to_list(self, samples: List[str], key: str) -> Tuple[List, b | |||
| if self._raise_error_key_missing: | |||
| raise Exception(f"Error: key {key} does not exist in sample {index}: {sample}") | |||
| else: | |||
| value = None | |||
There was a problem hiding this comment.
I thought that your use-case deals with a sample that is None and missing a key in one of the samples.
Cann you comment about it?
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