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Update data source versions
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github-actions[bot] committed Dec 4, 2024
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4 changes: 2 additions & 2 deletions result.json
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"Medicines_output_herbal_medicines.xlsx": "https://www.ema.europa.eu/sites/default/files/Medicines_output_herbal_medicines.xlsx"
},
"latest": true,
"version": "2024.12.03"
"version": "2024.12.04"
}
],
"GWASCatalog": [
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"mondo.obo": "http://purl.obolibrary.org/obo/mondo.obo"
},
"latest": true,
"version": "2024.11.05"
"version": "2024.12.03"
}
],
"NDF-RT": [],
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2 changes: 1 addition & 1 deletion result.min.json
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{"AACT": [], "CanadianNutrientFile": [{"version": "2016.06.03", "files": {"cnf-fcen-csv.zip": "https://www.canada.ca/content/dam/hc-sc/migration/hc-sc/fn-an/alt_formats/zip/nutrition/fiche-nutri-data/cnf-fcen-csv.zip"}, "latest": true}], "CancerDrugsDB": [], "DGIdb": [], "DrugBank": [], "DrugCentral": [], "EMA": [{"version": "2024.12.03", "files": {"Medicines_output_european_public_assessment_reports.xlsx": "https://www.ema.europa.eu/sites/default/files/Medicines_output_european_public_assessment_reports.xlsx", "Medicines_output_herbal_medicines.xlsx": "https://www.ema.europa.eu/sites/default/files/Medicines_output_herbal_medicines.xlsx"}, "latest": true}], "Gene2Phenotype": [{"version": "2024.11.22", "files": {"CancerG2P.csv.gz": "https://www.ebi.ac.uk/gene2phenotype/downloads/CancerG2P.csv.gz", "DDG2P.csv.gz": "https://www.ebi.ac.uk/gene2phenotype/downloads/DDG2P.csv.gz", "EyeG2P.csv.gz": "https://www.ebi.ac.uk/gene2phenotype/downloads/EyeG2P.csv.gz", "SkinG2P.csv.gz": "https://www.ebi.ac.uk/gene2phenotype/downloads/SkinG2P.csv.gz"}, "latest": true}], "GeneOntology": [{"version": "2024.11.03", "files": {"go.obo": "http://current.geneontology.org/ontology/go.obo", "goa_human.gaf.gz": "http://current.geneontology.org/annotations/goa_human.gaf.gz", "goa_human_complex.gaf.gz": "http://current.geneontology.org/annotations/goa_human_complex.gaf.gz", "goa_human_isoform.gaf.gz": "http://current.geneontology.org/annotations/goa_human_isoform.gaf.gz", "goa_human_rna.gaf.gz": "http://current.geneontology.org/annotations/goa_human_rna.gaf.gz"}, "latest": true}], "GWASCatalog": [{"version": "2024.11.20", "files": {"gwas_catalog_associations.tsv": "https://www.ebi.ac.uk/gwas/api/search/downloads/alternative", "gwas_catalog_studies.tsv": "https://www.ebi.ac.uk/gwas/api/search/downloads/studies_alternative", "gwas_catalog_ancestry.tsv": "https://www.ebi.ac.uk/gwas/api/search/downloads/ancestry"}, "latest": true}], "HGNC": [], "HPO": [{"version": "2024.08.13", "files": {"hp.obo": "https://raw.githubusercontent.com/obophenotype/human-phenotype-ontology/master/hp.obo", "phenotype.hpoa": "http://purl.obolibrary.org/obo/hp/hpoa/phenotype.hpoa", "genes_to_phenotype.txt": "http://purl.obolibrary.org/obo/hp/hpoa/genes_to_phenotype.txt", "phenotype_to_genes.txt": "http://purl.obolibrary.org/obo/hp/hpoa/phenotype_to_genes.txt"}, "latest": true}], "ITIS": [], "KEGG": [{"version": "2023.09.25", "files": {"dgroup": "ftp://ftp.genome.jp/pub/kegg/medicus/dgroup/dgroup", "drug": "ftp://ftp.genome.jp/pub/kegg/medicus/drug/drug", "disease": "ftp://ftp.genome.jp/pub/kegg/medicus/disease/disease", "network": "ftp://ftp.genome.jp/pub/kegg/medicus/network/network", "variant": "ftp://ftp.genome.jp/pub/kegg/medicus/network/variant", "human_genes_list.tsv": "http://rest.kegg.jp/list/hsa", "compounds_list.tsv": "http://rest.kegg.jp/list/compound", "organisms_list.tsv": "http://rest.kegg.jp/list/organism"}, "latest": true}], "MED-RT": [], "Mondo": [{"version": "2024.11.05", "files": {"mondo.obo": "http://purl.obolibrary.org/obo/mondo.obo"}, "latest": true}], "NDF-RT": [], "OpenTargets": [], "PathwayCommons": [], "PharmGKB": [{"version": "2024.11.05", "files": {"genes.zip": "https://s3.pgkb.org/data/genes.zip", "drugs.zip": "https://s3.pgkb.org/data/drugs.zip", "chemicals.zip": "https://s3.pgkb.org/data/chemicals.zip", "variants.zip": "https://s3.pgkb.org/data/variants.zip", "phenotypes.zip": "https://s3.pgkb.org/data/phenotypes.zip", "clinicalAnnotations.zip": "https://s3.pgkb.org/data/clinicalAnnotations.zip", "variantAnnotations.zip": "https://s3.pgkb.org/data/variantAnnotations.zip", "relationships.zip": "https://s3.pgkb.org/data/relationships.zip", "dosingGuidelines.json.zip": "https://s3.pgkb.org/data/dosingGuidelines.json.zip", "drugLabels.zip": "https://s3.pgkb.org/data/drugLabels.zip", "pathways-tsv.zip": "https://s3.pgkb.org/data/pathways-tsv.zip", "clinicalVariants.zip": "https://s3.pgkb.org/data/clinicalVariants.zip", "occurrences.zip": "https://s3.pgkb.org/data/occurrences.zip", "automated_annotations.zip": "https://s3.pgkb.org/data/automated_annotations.zip"}, "latest": true}], "ReDO-DB": [{"version": "24.10.02", "files": {"redo_db.txt": "https://acfdata.coworks.be/redo_db.txt"}, "latest": true}], "ReDOTrialsDB": [{"version": "2024.08.14", "files": {"ReDO_Trials_DB.txt": "https://acfdata.coworks.be/ReDO_Trials_DB.txt"}, "latest": true}], "Sider": [], "UNII": [], "UniProt": [{"version": "2024.11.27", "files": {"uniprot_sprot_human.xml.gz": "https://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/taxonomic_divisions/uniprot_sprot_human.xml.gz"}, "latest": true}], "USDA-PLANTS": [{"version": null, "files": {"plantlst.txt": "https://plants.sc.egov.usda.gov/assets/docs/CompletePLANTSList/plantlst.txt"}, "latest": true}]}
{"AACT": [], "CanadianNutrientFile": [{"version": "2016.06.03", "files": {"cnf-fcen-csv.zip": "https://www.canada.ca/content/dam/hc-sc/migration/hc-sc/fn-an/alt_formats/zip/nutrition/fiche-nutri-data/cnf-fcen-csv.zip"}, "latest": true}], "CancerDrugsDB": [], "DGIdb": [], "DrugBank": [], "DrugCentral": [], "EMA": [{"version": "2024.12.04", "files": {"Medicines_output_european_public_assessment_reports.xlsx": "https://www.ema.europa.eu/sites/default/files/Medicines_output_european_public_assessment_reports.xlsx", "Medicines_output_herbal_medicines.xlsx": "https://www.ema.europa.eu/sites/default/files/Medicines_output_herbal_medicines.xlsx"}, "latest": true}], "Gene2Phenotype": [{"version": "2024.11.22", "files": {"CancerG2P.csv.gz": "https://www.ebi.ac.uk/gene2phenotype/downloads/CancerG2P.csv.gz", "DDG2P.csv.gz": "https://www.ebi.ac.uk/gene2phenotype/downloads/DDG2P.csv.gz", "EyeG2P.csv.gz": "https://www.ebi.ac.uk/gene2phenotype/downloads/EyeG2P.csv.gz", "SkinG2P.csv.gz": "https://www.ebi.ac.uk/gene2phenotype/downloads/SkinG2P.csv.gz"}, "latest": true}], "GeneOntology": [{"version": "2024.11.03", "files": {"go.obo": "http://current.geneontology.org/ontology/go.obo", "goa_human.gaf.gz": "http://current.geneontology.org/annotations/goa_human.gaf.gz", "goa_human_complex.gaf.gz": "http://current.geneontology.org/annotations/goa_human_complex.gaf.gz", "goa_human_isoform.gaf.gz": "http://current.geneontology.org/annotations/goa_human_isoform.gaf.gz", "goa_human_rna.gaf.gz": "http://current.geneontology.org/annotations/goa_human_rna.gaf.gz"}, "latest": true}], "GWASCatalog": [{"version": "2024.11.20", "files": {"gwas_catalog_associations.tsv": "https://www.ebi.ac.uk/gwas/api/search/downloads/alternative", "gwas_catalog_studies.tsv": "https://www.ebi.ac.uk/gwas/api/search/downloads/studies_alternative", "gwas_catalog_ancestry.tsv": "https://www.ebi.ac.uk/gwas/api/search/downloads/ancestry"}, "latest": true}], "HGNC": [], "HPO": [{"version": "2024.08.13", "files": {"hp.obo": "https://raw.githubusercontent.com/obophenotype/human-phenotype-ontology/master/hp.obo", "phenotype.hpoa": "http://purl.obolibrary.org/obo/hp/hpoa/phenotype.hpoa", "genes_to_phenotype.txt": "http://purl.obolibrary.org/obo/hp/hpoa/genes_to_phenotype.txt", "phenotype_to_genes.txt": "http://purl.obolibrary.org/obo/hp/hpoa/phenotype_to_genes.txt"}, "latest": true}], "ITIS": [], "KEGG": [{"version": "2023.09.25", "files": {"dgroup": "ftp://ftp.genome.jp/pub/kegg/medicus/dgroup/dgroup", "drug": "ftp://ftp.genome.jp/pub/kegg/medicus/drug/drug", "disease": "ftp://ftp.genome.jp/pub/kegg/medicus/disease/disease", "network": "ftp://ftp.genome.jp/pub/kegg/medicus/network/network", "variant": "ftp://ftp.genome.jp/pub/kegg/medicus/network/variant", "human_genes_list.tsv": "http://rest.kegg.jp/list/hsa", "compounds_list.tsv": "http://rest.kegg.jp/list/compound", "organisms_list.tsv": "http://rest.kegg.jp/list/organism"}, "latest": true}], "MED-RT": [], "Mondo": [{"version": "2024.12.03", "files": {"mondo.obo": "http://purl.obolibrary.org/obo/mondo.obo"}, "latest": true}], "NDF-RT": [], "OpenTargets": [], "PathwayCommons": [], "PharmGKB": [{"version": "2024.11.05", "files": {"genes.zip": "https://s3.pgkb.org/data/genes.zip", "drugs.zip": "https://s3.pgkb.org/data/drugs.zip", "chemicals.zip": "https://s3.pgkb.org/data/chemicals.zip", "variants.zip": "https://s3.pgkb.org/data/variants.zip", "phenotypes.zip": "https://s3.pgkb.org/data/phenotypes.zip", "clinicalAnnotations.zip": "https://s3.pgkb.org/data/clinicalAnnotations.zip", "variantAnnotations.zip": "https://s3.pgkb.org/data/variantAnnotations.zip", "relationships.zip": "https://s3.pgkb.org/data/relationships.zip", "dosingGuidelines.json.zip": "https://s3.pgkb.org/data/dosingGuidelines.json.zip", "drugLabels.zip": "https://s3.pgkb.org/data/drugLabels.zip", "pathways-tsv.zip": "https://s3.pgkb.org/data/pathways-tsv.zip", "clinicalVariants.zip": "https://s3.pgkb.org/data/clinicalVariants.zip", "occurrences.zip": "https://s3.pgkb.org/data/occurrences.zip", "automated_annotations.zip": "https://s3.pgkb.org/data/automated_annotations.zip"}, "latest": true}], "ReDO-DB": [{"version": "24.10.02", "files": {"redo_db.txt": "https://acfdata.coworks.be/redo_db.txt"}, "latest": true}], "ReDOTrialsDB": [{"version": "2024.08.14", "files": {"ReDO_Trials_DB.txt": "https://acfdata.coworks.be/ReDO_Trials_DB.txt"}, "latest": true}], "Sider": [], "UNII": [], "UniProt": [{"version": "2024.11.27", "files": {"uniprot_sprot_human.xml.gz": "https://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/taxonomic_divisions/uniprot_sprot_human.xml.gz"}, "latest": true}], "USDA-PLANTS": [{"version": null, "files": {"plantlst.txt": "https://plants.sc.egov.usda.gov/assets/docs/CompletePLANTSList/plantlst.txt"}, "latest": true}]}
4 changes: 2 additions & 2 deletions update-log.txt
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Updating data sources at 2024-12-03T08:25:52.618682
Updating data sources at 2024-12-04T08:26:47.523273
Failed to retrieve data source "AACT" status list index out of range
Retrieved 1 versions for data source "CanadianNutrientFile"
Failed to retrieve data source "CancerDrugsDB" status list index out of range
Expand All @@ -22,6 +22,6 @@ Retrieved 1 versions for data source "PharmGKB"
Retrieved 1 versions for data source "ReDO-DB"
Retrieved 1 versions for data source "ReDOTrialsDB"
Failed to retrieve data source "Sider" status [Errno 110] Connection timed out
Failed to retrieve data source "UNII" status HTTPSConnectionPool(host='fdasis.nlm.nih.gov', port=443): Max retries exceeded with url: /srs/jsp/srs/uniiListDownload.jsp (Caused by NameResolutionError("<urllib3.connection.HTTPSConnection object at 0x7fb731d02cd0>: Failed to resolve 'fdasis.nlm.nih.gov' ([Errno -2] Name or service not known)"))
Failed to retrieve data source "UNII" status HTTPSConnectionPool(host='fdasis.nlm.nih.gov', port=443): Max retries exceeded with url: /srs/jsp/srs/uniiListDownload.jsp (Caused by NameResolutionError("<urllib3.connection.HTTPSConnection object at 0x7f7aa606ebb0>: Failed to resolve 'fdasis.nlm.nih.gov' ([Errno -2] Name or service not known)"))
Retrieved 1 versions for data source "UniProt"
Retrieved 1 versions for data source "USDA-PLANTS"

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