Update dependencies

BioDWH2 · Nov 17, 2023 · 1088177 · 1088177
1 parent ab5061e
commit 1088177
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Showing 6 changed files with 24 additions and 24 deletions.
diff --git a/src/pom.xml b/src/pom.xml
@@ -89,17 +89,17 @@
         <dependency>
             <groupId>de.unibi.agbi.biodwh2</groupId>
             <artifactId>biodwh2-core</artifactId>
-            <version>0.4.6</version>
+            <version>0.4.13</version>
         </dependency>
         <dependency>
             <groupId>info.picocli</groupId>
             <artifactId>picocli</artifactId>
-            <version>4.6.3</version>
+            <version>4.7.5</version>
         </dependency>
         <dependency>
             <groupId>commons-codec</groupId>
             <artifactId>commons-codec</artifactId>
-            <version>1.15</version>
+            <version>1.16.0</version>
         </dependency>
     </dependencies>
 

diff --git a/src/src/main/java/de/unibi/agbi/biodwh2/sql/exporter/SQLDump.java b/src/src/main/java/de/unibi/agbi/biodwh2/sql/exporter/SQLDump.java
@@ -7,16 +7,16 @@
 import de.unibi.agbi.biodwh2.core.model.graph.Node;
 import de.unibi.agbi.biodwh2.sql.exporter.model.Target;
 import org.apache.commons.lang3.StringUtils;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.logging.log4j.LogManager;
+import org.apache.logging.log4j.Logger;
 
 import java.io.BufferedWriter;
 import java.io.IOException;
 import java.util.*;
 import java.util.stream.Collectors;
 
 final class SQLDump {
-    private static final Logger LOGGER = LoggerFactory.getLogger(SQLExporter.class);
+    private static final Logger LOGGER = LogManager.getLogger(SQLExporter.class);
 
     private int insertBatchSize = 100;
     private String schemaName = "biodwh2";

diff --git a/src/src/main/java/de/unibi/agbi/biodwh2/sql/exporter/SQLExporter.java b/src/src/main/java/de/unibi/agbi/biodwh2/sql/exporter/SQLExporter.java
@@ -9,8 +9,8 @@
 import de.unibi.agbi.biodwh2.sql.exporter.model.Configuration;
 import de.unibi.agbi.biodwh2.sql.exporter.model.Target;
 import org.apache.commons.lang3.StringUtils;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.logging.log4j.LogManager;
+import org.apache.logging.log4j.Logger;
 import picocli.CommandLine;
 
 import java.io.*;
@@ -21,7 +21,7 @@
 import java.util.Locale;
 
 public class SQLExporter {
-    private static final Logger LOGGER = LoggerFactory.getLogger(SQLExporter.class);
+    private static final Logger LOGGER = LogManager.getLogger(SQLExporter.class);
     private static final String CONFIG_FILE_NAME = "sql_config.json";
 
     private SQLExporter() {

diff --git a/src/src/main/java/de/unibi/agbi/biodwh2/sql/exporter/TableNameProvider.java b/src/src/main/java/de/unibi/agbi/biodwh2/sql/exporter/TableNameProvider.java
@@ -4,16 +4,16 @@
 import de.unibi.agbi.biodwh2.core.model.graph.Graph;
 import de.unibi.agbi.biodwh2.sql.exporter.model.Configuration;
 import de.unibi.agbi.biodwh2.sql.exporter.model.Target;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.logging.log4j.LogManager;
+import org.apache.logging.log4j.Logger;
 
 import java.util.HashMap;
 import java.util.HashSet;
 import java.util.Map;
 import java.util.Set;
 
 public class TableNameProvider {
-    private static final Logger LOGGER = LoggerFactory.getLogger(TableNameProvider.class);
+    private static final Logger LOGGER = LogManager.getLogger(TableNameProvider.class);
 
     private final Target target;
     private final Configuration configuration;

diff --git a/src/src/main/resources/log4j2.xml b/src/src/main/resources/log4j2.xml
@@ -0,0 +1,12 @@
+<Configuration status="warn" name="biodwh2">
+    <Appenders>
+        <Console name="console" target="SYSTEM_OUT">
+            <PatternLayout pattern="%d{yyyy-MM-dd HH:mm:ss} [%-5p] %c:%L - %m%n%throwable"/>
+        </Console>
+    </Appenders>
+    <Loggers>
+        <Root level="info">
+            <AppenderRef ref="console"/>
+        </Root>
+    </Loggers>
+</Configuration>
diff --git a/src/src/main/resources/logback.xml b/src/src/main/resources/logback.xml