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@@ -11,58 +11,58 @@ services: | |
python: | ||
- 3.7 | ||
|
||
# env: | ||
# - NTEST=1 | ||
# - NTEST=2 | ||
# - NTEST=3 | ||
# - NTEST=4 | ||
# - NTEST=5 | ||
# - NTEST=6 | ||
# - NTEST=7 | ||
# - NTEST=8 | ||
# - NTEST=9 | ||
# - NTEST=10 | ||
# - NTEST=11 | ||
# - NTEST=12 | ||
# - NTEST=13 | ||
# - NTEST=14 | ||
# - NTEST=15 | ||
# - NTEST=16 | ||
# - NTEST=17 | ||
# - NTEST=18 | ||
# - NTEST=19 | ||
# - NTEST=20 | ||
# - NTEST=21 | ||
# - NTEST=22 | ||
# - NTEST=23 | ||
# - NTEST=24 | ||
# - NTEST=25 | ||
# - NTEST=26 | ||
# - NTEST=27 | ||
# - NTEST=28 | ||
# - NTEST=29 | ||
# - NTEST=30 | ||
# - NTEST=31 | ||
env: | ||
- NTEST=1 | ||
- NTEST=2 | ||
- NTEST=3 | ||
- NTEST=4 | ||
- NTEST=5 | ||
- NTEST=6 | ||
- NTEST=7 | ||
- NTEST=8 | ||
- NTEST=9 | ||
- NTEST=10 | ||
- NTEST=11 | ||
- NTEST=12 | ||
- NTEST=13 | ||
- NTEST=14 | ||
- NTEST=15 | ||
- NTEST=16 | ||
- NTEST=17 | ||
- NTEST=18 | ||
- NTEST=19 | ||
- NTEST=20 | ||
- NTEST=21 | ||
- NTEST=22 | ||
- NTEST=23 | ||
- NTEST=24 | ||
- NTEST=25 | ||
- NTEST=26 | ||
- NTEST=27 | ||
- NTEST=28 | ||
- NTEST=29 | ||
- NTEST=30 | ||
- NTEST=31 | ||
|
||
jobs: | ||
include: | ||
# - name: Unit tests | ||
# before_install: # to overwrite from the main config | ||
# - echo "Skip" | ||
# install: | ||
# - pip install . | ||
# before_script: # to overwrite from the main config | ||
# - echo "Skip" | ||
# script: ./tests/run_tests.sh | ||
# after_success: | ||
# - coveralls | ||
# deploy: | ||
# provider: pypi | ||
# user: michael_kotliar | ||
# password: | ||
# secure: 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 | ||
# on: | ||
# tags: true | ||
- name: Unit tests | ||
before_install: # to overwrite from the main config | ||
- echo "Skip" | ||
install: | ||
- pip install . | ||
before_script: # to overwrite from the main config | ||
- echo "Skip" | ||
script: ./tests/run_tests.sh | ||
after_success: | ||
- coveralls | ||
deploy: | ||
provider: pypi | ||
user: michael_kotliar | ||
password: | ||
secure: 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 | ||
on: | ||
tags: true | ||
- name: DAG with embedded workflow (just one test) | ||
script: cwl-airflow test --suite workflows/tests/conformance_tests.yaml --spin --range 1 --embed | ||
- name: Test of `init --upgrade` | ||
|
@@ -77,23 +77,23 @@ jobs: | |
- rm -f ~/airflow/dags/bam-bedgraph-bigwig-single.cwl | ||
script: airflow list_dags --report # to check if all DAGs are correct | ||
|
||
# before_install: | ||
# - git clone https://github.com/datirium/workflows.git --recursive | ||
# - docker pull mysql/mysql-server:5.7 | ||
# - docker run -v ~/database:/var/lib/mysql -e MYSQL_ROOT_PASSWORD=airflow -e MYSQL_DATABASE=airflow -e MYSQL_USER=airflow -e MYSQL_PASSWORD=airflow -p 6603:3306 -d mysql/mysql-server:5.7 --explicit-defaults-for-timestamp=1 | ||
# install: | ||
# - pip install . | ||
# - pip install mysqlclient | ||
# before_script: | ||
# - airflow --help # to generate airflow.cfg | ||
# - sed -i'.backup' -e 's/^executor.*/executor = LocalExecutor/g' ~/airflow/airflow.cfg | ||
# - sed -i'.backup' -e 's/^dag_dir_list_interval =.*/dag_dir_list_interval = 60/g' ~/airflow/airflow.cfg | ||
# - sed -i'.backup' -e 's/^parallelism =.*/parallelism = 1/g' ~/airflow/airflow.cfg | ||
# - sed -i'.backup' -e 's/^sql_alchemy_conn.*/sql_alchemy_conn = mysql:\/\/airflow:[email protected]:6603\/airflow/g' ~/airflow/airflow.cfg | ||
# - cwl-airflow init # to init database and add process_report connection | ||
# - airflow scheduler > /dev/null 2>&1 & | ||
# - cwl-airflow api > /dev/null 2>&1 & | ||
# script: cwl-airflow test --suite workflows/tests/conformance_tests.yaml --spin --range $NTEST | ||
before_install: | ||
- git clone https://github.com/datirium/workflows.git --recursive | ||
- docker pull mysql/mysql-server:5.7 | ||
- docker run -v ~/database:/var/lib/mysql -e MYSQL_ROOT_PASSWORD=airflow -e MYSQL_DATABASE=airflow -e MYSQL_USER=airflow -e MYSQL_PASSWORD=airflow -p 6603:3306 -d mysql/mysql-server:5.7 --explicit-defaults-for-timestamp=1 | ||
install: | ||
- pip install . | ||
- pip install mysqlclient | ||
before_script: | ||
- airflow --help # to generate airflow.cfg | ||
- sed -i'.backup' -e 's/^executor.*/executor = LocalExecutor/g' ~/airflow/airflow.cfg | ||
- sed -i'.backup' -e 's/^dag_dir_list_interval =.*/dag_dir_list_interval = 60/g' ~/airflow/airflow.cfg | ||
- sed -i'.backup' -e 's/^parallelism =.*/parallelism = 1/g' ~/airflow/airflow.cfg | ||
- sed -i'.backup' -e 's/^sql_alchemy_conn.*/sql_alchemy_conn = mysql:\/\/airflow:[email protected]:6603\/airflow/g' ~/airflow/airflow.cfg | ||
- cwl-airflow init # to init database and add process_report connection | ||
- airflow scheduler > /dev/null 2>&1 & | ||
- cwl-airflow api > /dev/null 2>&1 & | ||
script: cwl-airflow test --suite workflows/tests/conformance_tests.yaml --spin --range $NTEST | ||
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branches: | ||
only: | ||
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