Update test_all.py

pytest/test_all.py

@@ -1,52 +1,32 @@
-import GENetLib
 from GENetLib.sim_data_scalar import sim_data_scalar
-scalar_survival_linear = sim_data_scalar(rho_G = 0.25, rho_E = 0.3, dim_G = 500, dim_E = 5, n = 1500, dim_E_Sparse = 2, ytype = 'Survival', n_inter = 30)
-scalar_survival_linear_data = scalar_survival_linear[0]
-scalar_survival_linear_inter = scalar_survival_linear[1]
+from GENetLib.sim_data_func import sim_data_func
+from GENetLib.func_ge import func_ge
+from GENetLib.grid_func_ge import grid_func_ge
 
 
-from GENetLib.sim_data_func import sim_data_func
-func_continuous = sim_data_func(n = 1000, m = 100, ytype = 'Continuous', seed = 1)
-x = func_continuous['X']
-y = func_continuous['y']
-z = func_continuous['z']
-location = func_continuous['location']
+def test_sim_data_scalar():
+    scalar_survival_linear = sim_data_scalar(rho_G=0.25, rho_E=0.3, dim_G=500, dim_E=5, n=1500, dim_E_Sparse=2, ytype='Survival', n_inter=30)
+    assert scalar_survival_linear[0] is not None
+    assert scalar_survival_linear[1] is not None
 
 
-from GENetLib.sim_data_func import sim_data_func
-from GENetLib.func_ge import func_ge
-num_hidden_layers = 2
-nodes_hidden_layer = [100,10]
-Learning_Rate2 = 0.035
-L2 = 0.01
-Learning_Rate1 = 0.02
-L = 0.01
-Num_Epochs = 50
-nbasis1 = 5
-params1 = 4
-func_continuous = sim_data_func(n = 1500, m = 30, ytype = 'Continuous', seed = 123)
-y = func_continuous['y']
-z = func_continuous['z']
-location = func_continuous['location']
-X = func_continuous['X']
-func_ge_res = func_ge(y, z, location, X, 'Continuous', 'Bspline', num_hidden_layers, nodes_hidden_layer, Learning_Rate2, L2, Learning_Rate1, L, Num_Epochs, nbasis1, params1, Bsplines = 5, norder1 = 4, model = None, split_type = 1, ratio = [3, 1, 1], plot_res = True)
+def test_sim_data_func_and_func_ge():
+    func_continuous = sim_data_func(n=1500, m=30, ytype='Continuous', seed=123)
+    assert func_continuous['X'] is not None 
+    assert func_continuous['y'] is not None
+    assert func_continuous['z'] is not None
+    assert func_continuous['location'] is not None
 
+    func_ge_res = func_ge(func_continuous['y'], func_continuous['z'], func_continuous['location'], func_continuous['X'], 'Continuous', 'Bspline', num_hidden_layers=2, nodes_hidden_layer=[100,10], Learning_Rate2=0.035, L2=0.01, Learning_Rate1=0.02, L=0.01, Num_Epochs=50, nbasis1=5, params1=4, Bsplines=5, norder1=4, model=None, split_type=1, ratio=[3, 1, 1], plot_res=True)
+    assert func_ge_res is not None
 
-from GENetLib.sim_data_func import sim_data_func
-from GENetLib.grid_func_ge import grid_func_ge
-num_hidden_layers = 2
-nodes_hidden_layer = [100, 10]
-Learning_Rate2 = [0.008, 0.009, 0.01]
-L2 = [0.002, 0.003, 0.004, 0.005, 0.006]
-Learning_Rate1 = [0.02, 0.03, 0.04, 0.05]
-L = [0.05, 0.06, 0.07, 0.08]
-Num_Epochs = 100
-nbasis1 = 7
-params1 = 4
-func_continuous = sim_data_func(n = 1000, m = 100, ytype = 'Continuous', seed = 1)
-y = func_continuous['y']
-z = func_continuous['z']
-location = func_continuous['location']
-X = func_continuous['X']
-grid_func_ge_res = grid_func_ge(y, z, location, X, 'Continuous', 'Bspline', num_hidden_layers, nodes_hidden_layer, Learning_Rate2, L2, Learning_Rate1, L, Num_Epochs, nbasis1, params1, Bsplines = 15, norder1 = 4, model = None, split_type = 0, ratio = [7,3], plot_res = True)
 
+def test_grid_func_ge():
+    func_continuous = sim_data_func(n=1000, m=100, ytype='Continuous', seed=1)
+    assert func_continuous['X'] is not None
+    assert func_continuous['y'] is not None
+    assert func_continuous['z'] is not None
+    assert func_continuous['location'] is not None
+
+    grid_func_ge_res = grid_func_ge(func_continuous['y'], func_continuous['z'], func_continuous['location'], func_continuous['X'], 'Continuous', 'Bspline', num_hidden_layers=2, nodes_hidden_layer=[100, 10], Learning_Rate2=[0.008, 0.009, 0.01], L2=[0.002, 0.003, 0.004, 0.005, 0.006], Learning_Rate1=[0.02, 0.03, 0.04, 0.05], L=[0.05, 0.06, 0.07, 0.08], Num_Epochs=100, nbasis1=7, params1=4, Bsplines=15, norder1=4, model=None, split_type=0, ratio=[7,3], plot_res=True)
+    assert grid_func_ge_res is not None