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.. image:: https://img.shields.io/pypi/v/GENetLib?logo=Pypi | ||
:target: https://pypi.org/project/GENetLib | ||
:alt: PyPIversion | ||
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:target: https://pypi.org/project/GENetLib | ||
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``GENetLib``: A Python Library for Gene–environment Interaction Analysis via Deep Learning | ||
================================================================================ | ||
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``GENetLib`` is a Python library designed for gene-environment interaction analysis via neural network, addressing the analytical challenges in complex disease research. This package is capable of handling a variety of input data types: | ||
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- Scalar input data | ||
- Functional input data (or densely measured data) | ||
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This package also supports diverse output requirements: | ||
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- Continuous output data | ||
- Binary output data | ||
- Survival output data | ||
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By integrating minimax concave penalty (MCP) and L2-norm regularization within a neural network estimation framework, ``GENetLib`` offers an innovative solution for high-dimensional genetic data analysis. The framework is shown below. | ||
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.. image:: image/framework.png | ||
:alt: framework | ||
:width: 600 | ||
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We provide a web-based documentation which introduces the meaning of function parameters, the usage of functions, detailed information about methods, and gives examples for each. The web page is available at `documentations <https://open-box.readthedocs.io/en/latest/>`_. This package has been uploaded to PyPI with previous versions, and the web page is available at `PyPI package <https://pypi.org/project/genetlib/>`_. Users can also check `tags <https://github.com/Barry57/GENetLib/releases>`_ to get historical versions. |