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| @@ -1,73 +1,2 @@ | ||
| [tool.black] | ||
| line-length = 80 | ||
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| [tool.poetry] | ||
| name = "Barry57-GENetLib" | ||
| version = "1.1.3" | ||
| description = "A Python Library for Gene–environment Interaction Analysis via Deep Learning." | ||
| authors = ["Yuhao Zhong <[email protected]>"] | ||
| license = "MIT" | ||
| readme = "README.md" | ||
| documentation = "https://barry57.github.io/GENetLib/" | ||
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| [tool.poetry.dependencies] | ||
| python = ">=3.9,<3.12" | ||
| flax = "^0.8.5" | ||
| optax = "^0.1.3" | ||
| matplotlib = "^3.6.2" | ||
| tqdm = "^4.64.1" | ||
| numpy = "^1.23.4" | ||
| tensorflow-cpu = { version = "^2.11.0", markers = "sys_platform != 'darwin'" } | ||
| tensorflow-macos = { version = "2.13.1", markers = "sys_platform == 'darwin'" } | ||
| array-record = { version = "0.4.1", markers = "sys_platform == 'darwin'" } | ||
| Sphinx = { version = "^7.0.0", optional = true } | ||
| sphinx-autodoc-typehints = { version = "^1.19.5", optional = true } | ||
| nbsphinx = { version = "^0.8.10", optional = true } | ||
| nbsphinx-link = { version = "^1.3.0", optional = true } | ||
| sphinx-gallery = { version = "^0.11.1", optional = true } | ||
| pydata-sphinx-theme = { version = "^0.12.0", optional = true } | ||
| ipython = { version = "^8.7.0", optional = true } | ||
| jupyter = {version = "^1.0.0", optional = true} | ||
| transformers = {version = "^4.28.1", optional = true} | ||
| datasets = {version = "^2.11.0", optional = true} | ||
| sagemaker-utils = {version = "^0.3.6", optional = true} | ||
| sagemaker = {version = "^2.161.0", optional = true} | ||
| boto3 = {version = "^1.26.145", optional = true} | ||
| hydra-core = {version = "^1.3.2", optional = true} | ||
| torch = {version = "^2.1.0", optional = true} | ||
| scikit-learn = {version = "^1.3.2", optional = true} | ||
| umap-learn = {version = "^0.5.5", optional = true} | ||
| tabulate = "^0.9.0" | ||
| jax = "~0.4.30" | ||
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| [tool.poetry.extras] | ||
| docs = ["Sphinx", "sphinx-autodoc-typehints", "pydata-sphinx-theme", "nbsphinx", "nbsphinx-link", | ||
| "sphinx-gallery", "ipython", "pandas", "tensorflow-datasets", "xlrd", "openpyxl", "yfinance", 'tabulate', 'pandoc'] | ||
| notebooks = ["jupyter"] | ||
| transformers = ["transformers", "datasets"] | ||
| sagemaker = ["boto3", "hydra-core", "sagemaker", "sagemaker-utils"] | ||
| hallucination = ["torch", "transformers", "datasets", "scikit-learn", "umap-learn"] | ||
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| [tool.poetry.group.dev.dependencies] | ||
| traitlets = "^5.5.0" | ||
| pre-commit = "^3.3.1" | ||
| absolufy-imports = "^0.3.1" | ||
| codespell = "^2.2.4" | ||
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| [tool.poetry.group.test.dependencies] | ||
| pytest-cov = "^4.0.0" | ||
| pytest = "^7.2.2" | ||
| scikit-learn = "^1.2.2" | ||
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| [tool.poetry.group.docs.dependencies] | ||
| yfinance = "^0.2.12" | ||
| tabulate = "^0.9.0" | ||
| tensorflow-datasets = "^4.8.3" | ||
| xlrd = "^2.0.1" | ||
| openpyxl = "^3.1.2" | ||
| myst-nb = "^1.1.0" | ||
| jupytext = "^1.14.5" | ||
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| [build-system] | ||
| requires = ["poetry-core"] | ||
| build-backend = "poetry.core.masonry.api" |