Merge pull request #3 from BRENDA-Enzymes/odk-bto-spl

BTO release ODK
BRENDA-Enzymes · Nov 18, 2019 · 8f5de39 · 8f5de39
2 parents f48f4cb + 4376939
commit 8f5de39
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Showing 37 changed files with 2,105,668 additions and 7 deletions.
diff --git a/bto-base.json b/bto-base.json
diff --git a/bto-base.obo b/bto-base.obo
diff --git a/bto-base.owl b/bto-base.owl
diff --git a/bto-full.json b/bto-full.json
diff --git a/bto-full.obo b/bto-full.obo
diff --git a/bto-full.owl b/bto-full.owl
diff --git a/bto-simple.json b/bto-simple.json
@@ -0,0 +1,92 @@
+{
+  "graphs" : [ {
+    "nodes" : [ {
+      "id" : "http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty",
+      "type" : "PROPERTY",
+      "lbl" : "synonym_type_property"
+    }, {
+      "id" : "http://purl.obolibrary.org/obo/TEMP#SCI",
+      "type" : "PROPERTY",
+      "lbl" : "SCIENTIFIC NAME"
+    }, {
+      "id" : "http://purl.obolibrary.org/obo/TEMP#MS",
+      "type" : "PROPERTY",
+      "lbl" : "MISSPELLING"
+    }, {
+      "id" : "http://purl.obolibrary.org/obo/TEMP#related_to",
+      "meta" : {
+        "basicPropertyValues" : [ {
+          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
+          "val" : "BrendaTissueOBO"
+        } ]
+      },
+      "type" : "PROPERTY",
+      "lbl" : "related to"
+    }, {
+      "id" : "http://purl.obolibrary.org/obo/TEMP#part_of",
+      "meta" : {
+        "basicPropertyValues" : [ {
+          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
+          "val" : "BrendaTissueOBO"
+        } ]
+      },
+      "type" : "PROPERTY",
+      "lbl" : "part of"
+    }, {
+      "id" : "http://purl.obolibrary.org/obo/TEMP#GE",
+      "type" : "PROPERTY",
+      "lbl" : "LANGUAGE GERMAN"
+    }, {
+      "id" : "http://purl.obolibrary.org/obo/TEMP#is_a",
+      "meta" : {
+        "basicPropertyValues" : [ {
+          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
+          "val" : "BrendaTissueOBO"
+        } ]
+      },
+      "type" : "PROPERTY",
+      "lbl" : "is a"
+    }, {
+      "id" : "http://purl.obolibrary.org/obo/TEMP#FR",
+      "type" : "PROPERTY",
+      "lbl" : "LANGUAGE FRENCH"
+    }, {
+      "id" : "http://purl.obolibrary.org/obo/TEMP#develops_from",
+      "meta" : {
+        "basicPropertyValues" : [ {
+          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
+          "val" : "BrendaTissueOBO"
+        } ]
+      },
+      "type" : "PROPERTY",
+      "lbl" : "derives from/develops from"
+    } ],
+    "edges" : [ ],
+    "id" : "http://purl.obolibrary.org/obo/bto/bto-simple.json",
+    "meta" : {
+      "subsets" : [ ],
+      "xrefs" : [ ],
+      "basicPropertyValues" : [ {
+        "pred" : "http://www.geneontology.org/formats/oboInOwl#auto-generated-by",
+        "val" : "OBO-Edit 2.3.1"
+      }, {
+        "pred" : "http://www.geneontology.org/formats/oboInOwl#date",
+        "val" : "10:10:2019 10:14"
+      }, {
+        "pred" : "http://www.geneontology.org/formats/oboInOwl#default-namespace",
+        "val" : "file:Z:/Daten/Marion_Arbeit/3_TU_BS_enzymeta/tissue ontology DAG Editor/BrendaTissueOBO1367"
+      }, {
+        "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion",
+        "val" : "1.2"
+      }, {
+        "pred" : "http://www.geneontology.org/formats/oboInOwl#saved-by",
+        "val" : "Marion"
+      } ],
+      "version" : "http://purl.obolibrary.org/obo/bto/releases/2019-11-14/bto-simple.json"
+    },
+    "equivalentNodesSets" : [ ],
+    "logicalDefinitionAxioms" : [ ],
+    "domainRangeAxioms" : [ ],
+    "propertyChainAxioms" : [ ]
+  } ]
+}
diff --git a/bto-simple.obo b/bto-simple.obo
@@ -0,0 +1,32 @@
+format-version: 1.2
+data-version: bto/releases/2019-11-14/bto-simple.owl
+date: 10:10:2019 10:14
+saved-by: Marion
+auto-generated-by: OBO-Edit 2.3.1
+synonymtypedef: FR "LANGUAGE FRENCH"
+synonymtypedef: GE "LANGUAGE GERMAN"
+synonymtypedef: MS "MISSPELLING"
+synonymtypedef: SCI "SCIENTIFIC NAME"
+default-namespace: file:Z:/Daten/Marion_Arbeit/3_TU_BS_enzymeta/tissue ontology DAG Editor/BrendaTissueOBO1367
+ontology: bto/bto-simple
+
+[Typedef]
+id: develops_from
+name: derives from/develops from
+namespace: BrendaTissueOBO
+
+[Typedef]
+id: is_a
+name: is a
+namespace: BrendaTissueOBO
+
+[Typedef]
+id: part_of
+name: part of
+namespace: BrendaTissueOBO
+
+[Typedef]
+id: related_to
+name: related to
+namespace: BrendaTissueOBO
+
diff --git a/bto-simple.owl b/bto-simple.owl
@@ -0,0 +1,142 @@
+<?xml version="1.0"?>
+<rdf:RDF xmlns="http://purl.obolibrary.org/obo/bto/bto-simple.owl#"
+     xml:base="http://purl.obolibrary.org/obo/bto/bto-simple.owl"
+     xmlns:owl="http://www.w3.org/2002/07/owl#"
+     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+     xmlns:xml="http://www.w3.org/XML/1998/namespace"
+     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+     xmlns:TEMP="http://purl.obolibrary.org/obo/TEMP#"
+     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
+    <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/bto/bto-simple.owl">
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/bto/releases/2019-11-14/bto-simple.owl"/>
+        <oboInOwl:auto-generated-by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBO-Edit 2.3.1</oboInOwl:auto-generated-by>
+        <oboInOwl:date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">10:10:2019 10:14</oboInOwl:date>
+        <oboInOwl:default-namespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">file:Z:/Daten/Marion_Arbeit/3_TU_BS_enzymeta/tissue ontology DAG Editor/BrendaTissueOBO1367</oboInOwl:default-namespace>
+        <oboInOwl:hasOBOFormatVersion rdf:datatype="http://www.w3.org/2001/XMLSchema#string">1.2</oboInOwl:hasOBOFormatVersion>
+        <oboInOwl:saved-by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Marion</oboInOwl:saved-by>
+    </owl:Ontology>
+
+
+
+    <!-- 
+    ///////////////////////////////////////////////////////////////////////////////////////
+    //
+    // Annotation properties
+    //
+    ///////////////////////////////////////////////////////////////////////////////////////
+     -->
+
+
+
+
+    <!-- http://purl.obolibrary.org/obo/TEMP#FR -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/TEMP#FR">
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">LANGUAGE FRENCH</rdfs:label>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
+    </owl:AnnotationProperty>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/TEMP#GE -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/TEMP#GE">
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">LANGUAGE GERMAN</rdfs:label>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
+    </owl:AnnotationProperty>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/TEMP#MS -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/TEMP#MS">
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MISSPELLING</rdfs:label>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
+    </owl:AnnotationProperty>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/TEMP#SCI -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/TEMP#SCI">
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">SCIENTIFIC NAME</rdfs:label>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
+    </owl:AnnotationProperty>
+
+
+
+    <!-- http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty -->
+
+    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty">
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">synonym_type_property</rdfs:label>
+    </owl:AnnotationProperty>
+
+
+
+    <!-- http://www.geneontology.org/formats/oboInOwl#hasOBONamespace -->
+
+    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasOBONamespace"/>
+
+
+
+    <!-- http://www.geneontology.org/formats/oboInOwl#id -->
+
+    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id"/>
+
+
+
+    <!-- 
+    ///////////////////////////////////////////////////////////////////////////////////////
+    //
+    // Object Properties
+    //
+    ///////////////////////////////////////////////////////////////////////////////////////
+     -->
+
+
+
+
+    <!-- http://purl.obolibrary.org/obo/TEMP#develops_from -->
+
+    <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/TEMP#develops_from">
+        <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BrendaTissueOBO</oboInOwl:hasOBONamespace>
+        <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">develops_from</oboInOwl:id>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">derives from/develops from</rdfs:label>
+    </owl:ObjectProperty>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/TEMP#is_a -->
+
+    <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/TEMP#is_a">
+        <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BrendaTissueOBO</oboInOwl:hasOBONamespace>
+        <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">is_a</oboInOwl:id>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">is a</rdfs:label>
+    </owl:ObjectProperty>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/TEMP#part_of -->
+
+    <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/TEMP#part_of">
+        <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BrendaTissueOBO</oboInOwl:hasOBONamespace>
+        <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">part_of</oboInOwl:id>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">part of</rdfs:label>
+    </owl:ObjectProperty>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/TEMP#related_to -->
+
+    <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/TEMP#related_to">
+        <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BrendaTissueOBO</oboInOwl:hasOBONamespace>
+        <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">related_to</oboInOwl:id>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">related to</rdfs:label>
+    </owl:ObjectProperty>
+</rdf:RDF>
+
+
+
+<!-- Generated by the OWL API (version 4.5.6) https://github.com/owlcs/owlapi -->
+