v0.2.4

• Removed defaults channel (Issue #49 )

Full change log: v0.2.3...v0.2.4

v0.2.3

• Update TBProfiler to v6.3.0 (Issue #35, fixed in #40 by @taranewman and @dfornika )
• Update resistance genes bed file (Issue #45, fixed in #46 by @taranewman and @dfornika)
• Add a summary of the coverage of all genes conferring resistance to each drug (Issue #47 , fixed in #46 by @taranewman and @dfornika)

Full Changelog:: v0.2.2...v0.2.3

v0.2.2

What's Changed

• Add resistance gene depth qc (Issue #12, fixed by @dfornika in #13 and @taranewman in #14)
• Fixed division by 0 when calculating qc metrics (Issue #15, fixed by @taranewman in #17)
• Check snpit results against tbprofiler and correct when necessary (Issue #18, fixed by @dfornika in #21, #24 and #26)
• Update provenance format (Issue #20, fixed by @taranewman in #27)
• Handle ZeroDivision error that caused coverage plotting to fail on neg controls (Issue #25, fixed by @taranewman in #29)
• Collect tabular outputs (Issue #19, fixed by @dfornika in #32)
• Removed --versioned_outdir param (Issue #31, fixed by @dfornika in #33)
• Add github actions testing pipeline (Issue #30, fixed by @dfornika in #34)

Full Changelog: v0.2.1...v0.2.2

v0.2.1

• Added resistance mutation summary table that includes all mutations per drug from tbprofiler report (Issue #10)

v0.2.0

• Incorporated philipfowler/snpit for subspecies calling (Issue #8)

v0.1.0

• Initial release