Add testing workflow #2
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| name: "Tests" | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| workflow_dispatch: | |
| jobs: | |
| tests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Repo | |
| uses: actions/checkout@v1 | |
| - name: Create artifacts directory | |
| run: | | |
| mkdir -p artifacts/artifacts | |
| - name: Setup Java | |
| uses: actions/setup-java@v3 | |
| with: | |
| distribution: 'temurin' | |
| java-version: '21' | |
| - name: Download Run Simulator | |
| run: | | |
| wget https://github.com/dfornika/illumina-run-simulator/releases/download/v0.1.0/illumina-run-simulator-0.1.0-standalone.jar -O illumina-run-simulator.jar | |
| - name: Simulate Runs | |
| run: | | |
| mkdir -p artifacts/simulated_runs/{M00123,M00456,VH00123}/22 | |
| bash .github/scripts/simulate_runs.sh | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |