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@dfornika dfornika released this 18 Dec 21:49
· 17 commits to master since this release
v1.1
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Learn about vigilant mode.
  • Perform dehosting upstream of analysis
  • Update to ivar-1.3 and incorporate amplicon filtering
  • Publish dehosted .fastq.gz and consensus files to an nml_upload directory
  • Routinely align each consensus against the reference, and trim 5' and 3' UTR regions
  • Index all published .bam files
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