Merge branch 'main' of https://github.com/AustralianBioCommons/human-… #266
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| on: | |
| # Runs on pushes targeting the default branch | |
| push: | |
| branches: ["main"] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| # Allow only one concurrent deployment, skipping runs queued between the run in-progress and latest queued. | |
| # However, do NOT cancel in-progress runs as we want to allow these production deployments to complete. | |
| concurrency: | |
| group: "pages" | |
| cancel-in-progress: false | |
| jobs: | |
| fetch_references_update_tools: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: setup python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.8.16' | |
| - name: install python packages | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| - name: execute zotero script | |
| run: python var/extract_zotero.py --zot-library-id 4744118 | |
| - name: execute table conversion script | |
| run: python var/tools_table_conversion.py | |
| - name: Commit if updated | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Action" | |
| git add -A | |
| git diff-index --quiet HEAD || git commit -m "update refs" | |
| - name: Push if changes | |
| uses: ad-m/[email protected] | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| branch: main | |
| # Use GitHub Actions' cache to cache dependencies on servers | |
| build: | |
| runs-on: ubuntu-latest | |
| needs: fetch_references_update_tools | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| ref: ${{ github.event.inputs.branch }} | |
| - name: Setup Ruby | |
| uses: ruby/[email protected] | |
| with: | |
| ruby-version: '3.1' | |
| bundler-cache: true | |
| cache-version: 0 | |
| - name: Setup Pages | |
| id: pages | |
| uses: actions/configure-pages@v2 | |
| - name: Install dependencies | |
| run: | | |
| bundle install | |
| - name: Build with Jekyll | |
| # Outputs to the './_site' directory by default | |
| run: | | |
| bundle exec jekyll build --baseurl "${{ steps.pages.outputs.base_path }}" | |
| env: | |
| PAGES_REPO_NWO: ${{ github.repository }} | |
| JEKYLL_ENV: ${{ steps.name.outputs.jekyll_env }} | |
| JEKYLL_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Upload artifact | |
| uses: actions/upload-pages-artifact@v1 | |
| # Deployment job | |
| deploy: | |
| environment: | |
| name: github-pages | |
| url: ${{ steps.deployment.outputs.page_url }} | |
| runs-on: ubuntu-latest | |
| needs: build | |
| permissions: | |
| contents: read | |
| pages: write | |
| id-token: write | |
| steps: | |
| - name: Deploy to GitHub Pages | |
| id: deployment | |
| uses: actions/deploy-pages@v2 |