Merge pull request #8 from AustralianBioCommons/kylieprac #260
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| on: | |
| # Runs on pushes targeting the default branch | |
| push: | |
| branches: ["main"] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| # Allow only one concurrent deployment, skipping runs queued between the run in-progress and latest queued. | |
| # However, do NOT cancel in-progress runs as we want to allow these production deployments to complete. | |
| concurrency: | |
| group: "pages" | |
| cancel-in-progress: false | |
| jobs: | |
| fetch_references_update_tools: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: setup python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.8.16' | |
| - name: install python packages | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| - name: execute zotero script | |
| run: python var/extract_zotero.py --zot-library-id 4744118 | |
| - name: execute table conversion script | |
| run: python var/tools_table_conversion.py | |
| - name: Commit if updated | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Action" | |
| git add -A | |
| git diff-index --quiet HEAD || git commit -m "update refs" | |
| - name: Push if changes | |
| uses: ad-m/[email protected] | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| branch: main | |
| # Use GitHub Actions' cache to cache dependencies on servers | |
| build: | |
| runs-on: ubuntu-latest | |
| needs: fetch_references_update_tools | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| ref: ${{ github.event.inputs.branch }} | |
| - name: Setup Ruby | |
| uses: ruby/[email protected] | |
| with: | |
| ruby-version: '3.1' | |
| bundler-cache: true | |
| cache-version: 0 | |
| - name: Setup Pages | |
| id: pages | |
| uses: actions/configure-pages@v2 | |
| - name: Install dependencies | |
| run: | | |
| bundle install | |
| - name: Build with Jekyll | |
| # Outputs to the './_site' directory by default | |
| run: | | |
| bundle exec jekyll build --baseurl "${{ steps.pages.outputs.base_path }}" | |
| env: | |
| PAGES_REPO_NWO: ${{ github.repository }} | |
| JEKYLL_ENV: ${{ steps.name.outputs.jekyll_env }} | |
| JEKYLL_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Upload artifact | |
| uses: actions/upload-pages-artifact@v1 | |
| # Deployment job | |
| deploy: | |
| environment: | |
| name: github-pages | |
| url: ${{ steps.deployment.outputs.page_url }} | |
| runs-on: ubuntu-latest | |
| needs: build | |
| permissions: | |
| contents: read | |
| pages: write | |
| id-token: write | |
| steps: | |
| - name: Deploy to GitHub Pages | |
| id: deployment | |
| uses: actions/deploy-pages@v2 |