change default normalise: 20000

AndrewLangvt · Feb 6, 2021 · a676b7a · a676b7a
1 parent 57fe18e
commit a676b7a
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diff --git a/tasks/task_ont_medaka.wdl b/tasks/task_ont_medaka.wdl
@@ -64,7 +64,7 @@ task consensus {
     String    samplename
     File      filtered_reads
     String?    artic_primer_version="V3"
-    Int?      normalise=200
+    Int?      normalise=20000
     Int?      cpu=8
   }
 

diff --git a/workflows/wf_clearlabs_viral_refbased_assembly.wdl b/workflows/wf_clearlabs_viral_refbased_assembly.wdl
@@ -17,6 +17,7 @@ workflow viral_refbased_assembly {
     String  samplename
     String? artic_primer_version="V3"
     File    clear_lab_fastq
+    Int?      normalise=20000
 
     String	   	submission_id
     String 		  collection_date
@@ -44,6 +45,9 @@ workflow viral_refbased_assembly {
       samplename = samplename,
       filtered_reads = clear_lab_fastq,
       artic_primer_version = artic_primer_version
+      normalise=normalise
+
+
   }
   call consensus_call.variant_call {
     input: