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Reran new models after Catlab update. #76

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neonWhiteout
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Fixed sir_standard_stratification with a different hom import, renamed a variable in sir_linear_stratification. Overall, things worked pretty well.

In second commit, reran original examples. Had to do Graph = StockFlow.Graph a few times, as Catlab had a Graph which interfered. Fixed a few typos, converted a few comments to markdown.

All examples should be ok at this point.

…on with a different hom import, renamed a variable in sir_linear_stratification. Overall, things worked pretty well.
@neonWhiteout
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@Xiaoyan-Li Please have a look. Example models all work here.

@Xiaoyan-Li
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@Xiaoyan-Li Please have a look. Example models all work here.

Thank you very much!! The examples all look great!

Only have a quick question: What is the difference between the two examples: diabetes_diagnose and sir_linear... seems are all about the diabetes stratified models? Should we combine those two examples to be one? Or at least I may suggest modify the "sir_linear... " example's name to be "diabetes_linear...".

@neonWhiteout
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The sir linear and sir standard came from your paper, the diabetes model was one which already existed. It's possible they're the same.

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Will hopefully be good after this... need to let tests finish and see, though

@neonWhiteout
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Ok looks good

@Xiaoyan-Li Xiaoyan-Li merged commit 32661c5 into AlgebraicJulia:master Sep 27, 2023
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2 participants