Created Composition DSL. #10
Workflow file for this run
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| name: Check notebook examples for regressions | |
| on: [push, pull_request] | |
| env: | |
| JULIA_NUM_THREADS: 'auto' | |
| jobs: | |
| notebooks-examples-regression-test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Setup Julia | |
| uses: julia-actions/setup-julia@v1 | |
| with: | |
| version: 1.9 | |
| - name: Cache Julia dependencies | |
| uses: julia-actions/cache@v1 | |
| - name: Add IJulia Jupyter kernel | |
| run: julia --color=yes --project=. -e 'ENV["JULIA_PKG_PRECOMPILE_AUTO"]=0; using Pkg; pkg"add IJulia"' | |
| - name: Install Julia dependencies | |
| run: julia --color=yes --project=. -e 'import Pkg; Pkg.instantiate(); Pkg.resolve(); Pkg.precompile()' | |
| - uses: yaananth/run-notebook@v2 | |
| env: | |
| RUNNER: ${{ toJson(runner) }} | |
| SECRETS: ${{ toJson(secrets) }} | |
| GITHUB: ${{ toJson(github) }} | |
| with: | |
| notebook: "examples/full_fledged_schema_examples_new/stratification/diabetes_diagnose.ipynb" | |
| - uses: yaananth/run-notebook@v2 | |
| env: | |
| RUNNER: ${{ toJson(runner) }} | |
| SECRETS: ${{ toJson(secrets) }} | |
| GITHUB: ${{ toJson(github) }} | |
| with: | |
| notebook: "examples/full_fledged_schema_examples_new/composition/diabetes_model.ipynb" | |
| - uses: yaananth/run-notebook@v2 | |
| env: | |
| RUNNER: ${{ toJson(runner) }} | |
| SECRETS: ${{ toJson(secrets) }} | |
| GITHUB: ${{ toJson(github) }} | |
| with: | |
| notebook: "examples/full_fledged_schema_examples_new/CausalLoopDiagrams/convert_from_SEIR_stockFlowDiagram.ipynb" | |
| - uses: actions/upload-artifact@v3 | |
| if: always() | |
| with: | |
| name: output | |
| path: ${{ RUNNER.temp }}/nb-runner | |
| env: | |
| RUNNER: ${{ toJson(runner) }} |