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add paper database to publications tab
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jpfairbanks committed Jun 13, 2024
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8 changes: 4 additions & 4 deletions ejs/article-card.ejs
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</div>
<div class="col-10">
<div class="card-body">
<h5 class="card-title listing-title"><%= item.title %></h5>
<h5 class="card-title listing-title"><%= item.Title %></h5>
<p class="card-text text-muted">
<%= item.authors %><br />
<span class="fst-italic"><%= item.publication %></span><br />
Publication Year: <%= item.year %>
<%= item.Authors %><br />
<span class="fst-italic"><%= item.Venue %></span><br />
Publication Year: <%= item.Date %>
</p>
</div>
</div>
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13 changes: 9 additions & 4 deletions ejs/article.ejs
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<ul class="pub-list list">
<% for (const item of items) { %>
<li <%= metadataAttrs(item) %>>
<span class="listing-title lead"><%= item.title %></span><br />
<span class="listing-author"><%= item.author %></span><br />
<span class="listing-publication fst-italic "><%= item.publication %></span>
<span class="listing-year">(<%= item.year %>)</span><br />
<span class="listing-title lead"><%= item.Title %></span><br />
<span class="listing-author"><%= item.Authors %></span><br />
<span class="listing-publication fst-italic "><%= item.Venue %></span>
<span class="listing-year">(<%= item.Date %>)</span><br />
<a href="<%- item.path %>" class="btn btn-primary">
Details
</a>
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DOI
</a>
<% } %>
<% if (item.URL) { %>
<a href="<%- item.URL %>" class="btn btn-secondary" target="_blank" rel="noopener noreferrer">
URL
</a>
<% } %>
<% if (item.preprint) { %>
<a href="<%- item.preprint %>" class="btn btn-light" target="_blank" rel="noopener noreferrer">
<i class="bi bi-file-earmark-text"></i> Preprint
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70 changes: 23 additions & 47 deletions research.qmd
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---
title: "Research"
listing:
- id: publications
- id: journal-articles
template: ./ejs/article.ejs
contents:
- publications/jocs.md
- publications/diagrameqns/diagrameqns.md
- publications/diagrampresentations/diagrampresentations.md
- publications/article/*.md
sort:
- "year desc"
- "title"
categories: true
sort-ui: [title,author,publication,year]
filter-ui: [title,author,publication,year]
page-size: 20
field-display-names:
publication: "Publication"
date: "Date"
- id: conference-articles
template: ./ejs/article.ejs
contents:
- publications/conference_publication/*.md
sort:
- "year desc"
- "title"
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page-size: 10
field-display-names:
publication: "Publication"
year: "Year"
date: "Date"
---

:::{#articles}
:::

## Software

### [Decapodes.jl](https://algebraicjulia.github.io/Decapodes.jl/stable/)

Decapodes are a graphical tool for the composition of physical systems.
Ultimately, this library will include tooling which takes advantage of the formalization of physical theories described by DEC provided by CombinatorialSpaces.jl.

Links:
## Journal Papers

- [Mathematics in Engineering](publications/diagrameqns/diagrameqns.md)
- [Journal of Computational Science](publications/jocs.md)
- [General Categorical Story](publications/diagrampresentations/diagrampresentations.md)
:::{#journal-articles}
:::

### [AlgebraicControl.jl](https://github.com/AlgebraicJulia/AlgebraicControl.jl.git)
## Conference Papers

Model predictive control (MPC) is an optimal control technique which involves
solving a sequence of constrained optimization problems across a given time horizon.
We present a novel Julia library that leverages our theoretical results to automate
the implementation of correct-by-construction MPC problems in software.
:::{#conference-articles}
:::

## Preprints

| Year | Title |
| ---- | ----- |
| 2024 | [The diagrammatic presentation of equations in categories](https://arxiv.org/abs/2401.09751) <br> Kevin Arlin, James Fairbanks, Tim Hosgood, and Evan Patterson |
| 2024 | [Towards a Compositional Framework for Convex Analysis](https://arxiv.org/abs/2312.02291) <br> Richard Samuelson and Dario Stein |
| 2023 | [A Compositional Framework for Convex Model Predictive Control](https://arxiv.org/abs/2305.03820) <br> Tyler Hanks, Baike She, Matthew Hale, Evan Patterson, Matthew Klawonn, and James Fairbanks |
| 2023 | [Characterizing Compositionality of LQR from the Categorical Perspective](https://arxiv.org/abs/2305.01811) <br> Baike She, Tyler Hanks, James Fairbanks, and Matthew Hale |
| 2023 | [Compositional Algorithms on Compositional Data: Deciding Sheaves on Presheaves](https://arxiv.org/abs/2302.05575) <br> Ernst Althaus, Benjamin Merlin Bumpus, James Fairbanks, and Daniel Rosiak |
| 2023 | [A compositional account of motifs, mechanisms, and dynamics in biochemical regulatory networks](https://arxiv.org/abs/2301.01445) <br> Rebekah Aduddell, James Fairbanks, Amit Kumar, Pablo Ocal, Evan Patterson, and Brandon Shapiro |

## Journal Papers

| Year | Title |
| ---- | ----- |
| 2023 | [Computational category-theoretic rewriting](https://www.sciencedirect.com/science/article/abs/pii/S2352220823000421) <br> Kristopher Brown, Evan Patterson, Tyler Hanks, and James Fairbanks <br> [Journal of Logical and Algebraic Methods in Programming](https://www.sciencedirect.com/journal/journal-of-logical-and-algebraic-methods-in-programming) |
| 2023 | [The application of applied category theory to quantify mission success](https://journals.sagepub.com/doi/abs/10.1177/00375497221114861) <br> Robert K Garrett, James Fairbanks, Margaret Loper, and James Moreland <br> [Simulation](https://journals.sagepub.com/home/SIM) |
| 2022 | [An algebraic framework for structured epidemic modelling](https://royalsocietypublishing.org/doi/full/10.1098/rsta.2021.0309) <br> Sophie Libkind, Andrew Baas, Micah Halter, Evan Patterson, and James Fairbanks <br> [Philosophical Transactions of the Royal Society A](https://royalsocietypublishing.org/journal/rsta) |
| 2022 | [A diagrammatic view of differential equations in physics](http://www.aimspress.com/article/doi/10.3934/mine.2023036) <br> Evan Patterson, Andrew Baas, Timothy Hosgood, and James Fairbanks <br> [Mathematics in Engineering](http://www.aimspress.com/journal/mine) |
| 2021 | [Categorical Data Structures for Technical Computing](https://compositionality-journal.org/papers/compositionality-4-5/) <br> Evan Patterson, Owen Lynch, and James Fairbanks <br> [Compositionality](https://compositionality-journal.org) |
| 2021 | [Category-Theoretic Formulation of the Model-Based Systems Architecting Cognitive-Computational Cycle](https://www.mdpi.com/2076-3417/11/4/1945) <br> Yaniv Mordecai, James Fairbanks, and Edward Crawley <br> [Applied Sciences](https://www.mdpi.com/journal/applsci) |

## Conference Papers

| Year | Title |
| ---- | ----- |
| 2023 | [A Categorical Representation Language and Computational System for Knowledge-Based Robotic Task Planning](https://ojs.aaai.org/index.php/AAAI-SS/article/view/27718) <br> Angeline Aguinaldo, Evan Patterson, James Fairbanks, William Regli, and Jaime Ruiz <br> [2023 AAAI Fall Symposium on Unifying Representations for Robot Application Development](https://sites.google.com/view/aaai-ur-rad-symposium/home) |
| 2022 | [Compositional Exploration of Combinatorial Scientific Models](https://msp.cis.strath.ac.uk/act2022/papers/ACT2022_paper_2062.pdf) <br> Kristopher Brown, Tyler Hanks, and James Fairbanks <br> [5th International Conference on Applied Category Theory](https://msp.cis.strath.ac.uk/act2022/index.html) |
| 2022 | [Computational Category-Theoretic Rewriting](https://link.springer.com/chapter/10.1007/978-3-031-09843-7_9) <br> Kristopher Brown, Evan Patterson, Tyler Hanks, and James Fairbanks <br> [15th International Conference on Graph Transformation](https://icgt2022.gitlab.io) |
| 2021 | [Operadic Modeling of Dynamical Systems: Mathematics and Computation](https://arxiv.org/abs/2105.12282v3) <br> Sophie Libkind, Andrew Baas, Evan Patterson, and James Fairbanks <br> [4th International Conference on Applied Category Theory](https://www.cl.cam.ac.uk/events/act2021/) |

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