Add Publication Lists (#23)

Project.toml

@@ -1,2 +1,4 @@
 [deps]
 IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a"
+TOML = "fa267f1f-6049-4f14-aa54-33bafae1ed76"
+YAML = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6"

_quarto.yml

@@ -11,6 +11,7 @@ website:
     collapse-below: sm
     right:
       - members.qmd
+      - projects.qmd
       - research.qmd
       - text: "AMMA"
         href: amma.qmd
@@ -26,6 +27,13 @@ format:
     theme:
       light: flatly
       dark: darkly
+    linkcolor: "#4E8ABB" 
+    navbar:
+      background: "#4E8ABB"
+      foreground: "#6FB450"
+    # Blue: "#4E8ABB" 
+    # Green: "#6FB450"
+    # Orange: "#6FB450"
     css: styles.css
     monofont: JuliaMono-Regular
 

ejs/article-card.ejs

@@ -0,0 +1,22 @@
+
+```{=html}
+<% for (const item of items) { %>
+<div class="card mb-3">
+  <div class="row g-0">
+    <div class="col-2">
+      <img src="<%= item.image %>" class="img-fluid rounded-start" alt="Image of Journal Cover">
+    </div>
+    <div class="col-10">
+      <div class="card-body">
+        <h5 class="card-title listing-title"><%= item.Title %></h5>
+        <p class="card-text text-muted">
+          <%= item.Authors %><br />
+          <span class="fst-italic"><%= item.Venue %></span><br />
+          Publication Year: <%= item.Date %>
+        </p>
+      </div>
+    </div>
+  </div>
+</div>
+<% } %>
+```

ejs/article.ejs

@@ -0,0 +1,37 @@
+
+```{=html}
+<ul class="pub-list list">
+<% for (const item of items) { %>
+  <li <%= metadataAttrs(item) %>>
+    <span class="listing-title lead"><%= item.title %></span><br />
+    <span class="listing-author"><%= item.author %></span><br />
+    <span class="listing-publication fst-italic "><%= item.publication %></span>
+    <span class="listing-year">(<%= item.year %>)</span><br />
+    <a href="<%- item.path %>" class="btn btn-primary">
+      Details
+    </a>
+    <% if (item.doi) { %>
+    <a href="<%- item.doi %>" class="btn btn-secondary" target="_blank" rel="noopener noreferrer">
+      DOI
+    </a>
+    <% } %>
+    <% if (item.URL) { %>
+    <a href="<%- item.URL %>" class="btn btn-secondary" target="_blank" rel="noopener noreferrer">
+      URL
+    </a>
+    <% } %>
+    <% if (item.preprint) { %>
+    <a href="<%- item.preprint %>" class="btn btn-light" target="_blank" rel="noopener noreferrer">
+      <i class="bi bi-file-earmark-text"></i> Preprint
+    </a>
+    <% } %>
+    <% if (item.materials) { %>
+    <a href="<%- item.materials %>" class="btn btn-light" target="_blank" rel="noopener noreferrer">
+      <i class="bi bi-file-earmark-zip"></i> Materials
+    </a>
+    <% } %>
+  </li>
+<% } %>
+</ul>
+
+```

members.qmd

@@ -37,12 +37,12 @@ listing:
 
 |  Name | Where are they now?|
 |:------|:-------------------|
-|James Horn      |Master Student at Georgia Tech        |
+|James Horn      |Master's Student at Georgia Tech        |
 |Kris Brown      |Research Software Engineer at the Topos Institute|
 |Micah Halter    |Research Scientist at the Georgia Tech Research Institute|
 |Caroline Rogers |Industry|
 |Rebecca Boes    |Industry|
-|James Eschrich  |               |
+|James Eschrich  |PhD Student at University of Illinois (UIUC) |
 |Taylor Frederick|Industry|
-|Patrick Stokes  |GatorSense |
+|Patrick Stokes  |GatorSense Lab at UF ECE|
 

projects.qmd

@@ -0,0 +1,70 @@
+---
+title: "Projects"
+listing:
+  - id: decapodes-articles
+    template: ejs/article.ejs
+    contents:
+      - publications/jocs.md
+      - publications/diagrameqns/diagrameqns.md
+      - publications/diagrampresentations/diagrampresentations.md
+    sort: 
+      - "year desc"
+      - "publication asc"
+      - "title desc"
+    categories: true
+    fields: [year, title, author, publication, href]
+    sort-ui: [title,author,publication,year]
+    filter-ui: [title,author,publication,year]
+    page-size: 20
+    field-display-names: 
+      publication: "Journal"
+      date: "Date"
+      year: "Year"
+      href: "Link"
+---
+
+## Software
+
+### Decapodes.jl
+
+[Project Leader: Luke Morris](members/lukemorris.qmd)
+
+![Decapodes Logo](https://raw.githubusercontent.com/AlgebraicJulia/Decapodes.jl/main/docs/src/logo/decapodes_logo.svg){width=50%}
+
+[Decapodes.jl](https://github.com/AlgebraicJulia/Decapodes.jl) are a graphical tool for the composition of physical systems.     
+This library includes tooling which takes advantage of the formalization of physical theories described by DEC provided by CombinatorialSpaces.jl.
+
+![Point vortices spiraling](https://algebraicjulia.github.io/Decapodes.jl/dev/navier_stokes/vort.gif)
+
+Links:
+
+- [Diagrammatic Equations Paper](https://www.aimspress.com/data/article/preview/pdf/62989382ba35de155149669f.pdf)
+- [Decapodes Computational Paper](https://www.sciencedirect.com/science/article/pii/S1877750324001388)
+- [Code](https://github.com/AlgebraicJulia/Decapodes.jl)
+- [Docs](https://algebraicjulia.github.io/Decapodes.jl/dev/)
+
+#### General Categorical Equations
+
+Project Leader: Kevin Carlson
+
+![Diagrammatic Presentations of Equations](publications/diagrampresentations/fig1.png)
+
+- [Topos Blog 1](https://topos.site/blog/2022-04-08-diagrammatic-differential-equations-1/)
+- [Topos Blog 2](https://topos.site/blog/2022-04-15-diagrammatic-differential-equations-2/)
+- [arxiv](https://arxiv.org/abs/2401.09751)
+
+#### Decapodes Articles
+
+:::{#decapodes-articles}
+:::
+
+### Dynamics, Optimization and Control
+
+[Project Leader: Tyler Hanks](members/tylerhanks.qmd)
+
+[AlgebraicControl.jl](https://github.com/AlgebraicJulia/AlgebraicControl.jl)
+
+Model predictive control (MPC) is an optimal control technique which involves 
+solving a sequence of constrained optimization problems across a given time horizon.
+We present a novel Julia library that leverages our theoretical results to automate 
+the implementation of correct-by-construction MPC problems in software.