Remove Decapodes_v0.1 files

src/Decapodes.jl

@@ -1,16 +1,41 @@
 module Decapodes
 
-using Requires
+using Catlab
+using Catlab.Theories
+import Catlab.Theories: otimes, oplus, compose, ⊗, ⊕, ⋅, associate, associate_unit, Ob, Hom, dom, codom
+using Catlab.Present
+using Catlab.Programs
+using Catlab.CategoricalAlgebra
+using Catlab.WiringDiagrams
+using Catlab.WiringDiagrams.DirectedWiringDiagrams
+using LinearAlgebra
+using MLStyle
+using Base.Iterators
 
-include("Decapodes2/decapodes.jl")
-include("Diagrams.jl")
-include("OpenDiagrams.jl")
-include("Schedules.jl")
-include("Simulations.jl")
-include("Examples.jl")
+import Unicode
+
+export normalize_unicode, DerivOp, append_dot,
+  SchDecapode, SchNamedDecapode, AbstractDecapode, AbstractNamedDecapode, Decapode, NamedDecapode, SummationDecapode, fill_names!, expand_operators, add_constant!, add_parameter, infer_types!, resolve_overloads!, op1_inf_rules_1D, op2_inf_rules_1D, op1_inf_rules_2D, op2_inf_rules_2D, op1_res_rules_1D, op2_res_rules_1D, op1_res_rules_2D, op2_res_rules_2D,
+  Term, Var, Judge, Eq, AppCirc1, AppCirc2, App1, App2, Plus, Tan, term, parse_decapode,
+  VectorForm, PhysicsState, findname, findnode,
+  compile, compile_env, gensim, closest_point, flat_op,
+  AbstractMeshKey, loadmesh, Icosphere, Rectangle_30x10, Torus_30x10, Point_Map,
+  Open, OpenSummationDecapodeOb, OpenSummationDecapode, unique_by, unique_by!, oapply,
+  CartesianPoint, SpherePoint, r, theta, phi, TangentBasis, θhat, ϕhat,
+  average_rewrite
+
+normalize_unicode(s::String) = Unicode.normalize(s, compose=true, stable=true, chartransform=Unicode.julia_chartransform)
+normalize_unicode(s::Symbol)  = Symbol(normalize_unicode(String(s)))
+DerivOp = Symbol("∂ₜ")
+append_dot(s::Symbol) = Symbol(string(s)*'\U0307')
+
+include("decapodeacset.jl")
+include("language.jl")
+include("composition.jl")
+include("coordinates.jl")
+include("visualization.jl")
+include("simulation.jl")
+include("meshes.jl")
+include("rewrite.jl")
 
-function __init__()
-  @require CairoMakie="13f3f980-e62b-5c42-98c6-ff1f3baf88f0" include("Debug.jl")
-  @require AlgebraicPetri="4f99eebe-17bf-4e98-b6a1-2c4f205a959b" include("PetriNets.jl")
-end
 end