moving plots to extensions

Project.toml

@@ -9,7 +9,6 @@ Compose = "a81c6b42-2e10-5240-aca2-a61377ecd94b"
 LabelledArrays = "2ee39098-c373-598a-b85f-a56591580800"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 LinearMaps = "7a12625a-238d-50fd-b39a-03d52299707e"
-Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
 RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01"
 RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd"
 Reexport = "189a3867-3050-52da-a836-e630ba90ab69"
@@ -21,11 +20,13 @@ StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
 AlgebraicPetri = "4f99eebe-17bf-4e98-b6a1-2c4f205a959b"
 DelayDiffEq = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb"
 OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
+Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
 
 [extensions]
 AlgebraicDynamicsAlgebraicPetriExt = "AlgebraicPetri"
 AlgebraicDynamicsDelayDiffEqExt = "DelayDiffEq"
 AlgebraicDynamicsOrdinaryDiffEqExt = "OrdinaryDiffEq"
+AlgebraicDynamicsPlotsExt = "Plots"
 
 [compat]
 AlgebraicPetri = "0.9"

ext/AlgebraicDynamicsPlotsExt.jl

@@ -0,0 +1,21 @@
+using AlgebraicDynamics
+
+using Plots
+
+### Plotting backend
+@recipe function f(sol, m::AbstractMachine, p=nothing)
+    labels = (String ∘ Symbol).(output_ports(m))
+    label --> reshape(labels, 1, length(labels))
+    vars --> map(1:noutputs(m)) do i
+        ((t, args...) -> (t, readout(m)(collect(args), p, t)[i]), 0:nstates(m)...)
+    end
+    sol
+end
+
+### Plotting backend
+@recipe function f(sol, r::ResourceSharer)
+    labels = (String ∘ Symbol).(collect(view(ports(r), portmap(r))))
+    label --> reshape(labels, 1, length(labels))
+    vars --> portmap(r)
+    sol
+  end

src/dwd_dynam.jl

@@ -6,7 +6,6 @@ import Catlab.WiringDiagrams: oapply, input_ports, output_ports
 
 import ..UWDDynam: AbstractInterface, nstates, eval_dynamics, euler_approx, trajectory
 
-using Plots
 
 export AbstractMachine, ContinuousMachine, DiscreteMachine, DelayMachine, 
 InstantaneousContinuousMachine, InstantaneousDiscreteMachine, InstantaneousDelayMachine,
@@ -378,15 +377,7 @@ euler_approx(fs::AbstractDict{S, M}, args...) where {S, M<:ContinuousMachine} =
 
 
 
-### Plotting backend
-@recipe function f(sol, m::AbstractMachine, p=nothing)
-    labels = (String ∘ Symbol).(output_ports(m))
-    label --> reshape(labels, 1, length(labels))
-    vars --> map(1:noutputs(m)) do i
-        ((t, args...) -> (t, readout(m)(collect(args), p, t)[i]), 0:nstates(m)...)
-    end
-    sol
-end
+
 
 
 """    oapply(d::WiringDiagram, ms::Vector{M}) where {M<:AbstractMachine}

src/uwd_dynam.jl

@@ -5,8 +5,6 @@ using Catlab
 using Catlab.WiringDiagrams.UndirectedWiringDiagrams: AbstractUWD
 import Catlab.WiringDiagrams: oapply, ports
 
-using Plots
-
 export AbstractResourceSharer, ContinuousResourceSharer, DelayResourceSharer, DiscreteResourceSharer,
 euler_approx, nstates, nports, portmap, portfunction, trajectory,
 eval_dynamics, eval_dynamics!, exposed_states, fills, induced_states
@@ -217,13 +215,6 @@ euler_approx(fs::AbstractDict{S, R}, args...) where {S, T, R<:ContinuousResource
 # Trajectories
 function trajectory() end
 
-### Plotting backend
-@recipe function f(sol, r::ResourceSharer)
-  labels = (String ∘ Symbol).(collect(view(ports(r), portmap(r))))
-  label --> reshape(labels, 1, length(labels))
-  vars --> portmap(r)
-  sol
-end
 
 """    fills(r::AbstractResourceSharer, d::AbstractUWD, b::Int)