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Wrong notebook name:
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sjspielman committed Nov 27, 2024
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2 changes: 1 addition & 1 deletion analyses/cell-type-wilms-tumor-06/README.md
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Expand Up @@ -162,7 +162,7 @@ Steps denoted `[Exploratory]` below are only run when `RUN_EXPLORATORY=1` is set
- `[Exploratory]` Exploration of clustering, label transfers, marker genes and pathways: `notebook_template/03_clustering_exploration.Rmd` in `notebook_template`
- `[Exploratory]` Compare results of label transfer for all samples: `notebook/04_annotation_Across_Samples_exploration.Rmd`
- CNV inference using [`inferCNV`](https://github.com/broadinstitute/inferCNV/wiki) with endothelial and immune cells as reference from either the same patient or a pool of upfront resection Wilms tumor samples: `scripts/06_inferCNV.R`
- Combine label transfer and CNV to finalize the annotation of the Wilms tumor dataset: `notebook/07_annotation_Across_Samples_exploration.Rmd`
- Combine label transfer and CNV to finalize the annotation of the Wilms tumor dataset: `notebook/07_combined_annotation_across_samples_exploration.Rmd`


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