zellkonverter needs to be in dependencies, not in script, for now. I …

…also removed packages from dependencies.R that don't need to be there since they are in other scripts explicitly
AlexsLemonade · Nov 18, 2024 · 205c5f9 · 205c5f9
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commit 205c5f9
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diff --git a/analyses/cell-type-wilms-tumor-06/components/dependencies.R b/analyses/cell-type-wilms-tumor-06/components/dependencies.R
@@ -1,11 +1,9 @@
 # Tidyverse
-library(tidyverse)
 library(assertthat)
 
 # Single-cell packages
-library(Azimuth) # remotes::install_github("satijalab/azimuth")
-library(SCpubr)
 library(ggplotify)
 library(edgeR)
 library(ggdist)
 library(fetusref.SeuratData)
+library(zellkonverter)
diff --git a/analyses/cell-type-wilms-tumor-06/scripts/prepare-fetal-references.R b/analyses/cell-type-wilms-tumor-06/scripts/prepare-fetal-references.R
@@ -18,7 +18,6 @@
 library(optparse)
 library(Seurat)
 library(Azimuth)
-library(zellkonverter)
 
 # Parse arguments --------------------------------------------------------------
 # set up arguments