cell type/tumor annotation for ETP T-ALL (SCPCP000003) #1
Workflow file for this run
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| # This is a workflow to build the docker image for the cell-type-ETP-ALL-03 module | |
| # | |
| # Docker modules are run on pull requests when code for files that affect the Docker image have changed. | |
| # If other files are used during the Docker build, they should be added to `paths` | |
| # | |
| # At module initialization, this workflow is inactive, and needs to be activated manually | |
| name: Build docker image for cell-type-ETP-ALL-03 | |
| concurrency: | |
| # only one run per branch at a time | |
| group: "docker_cell-type-ETP-ALL-03_${{ github.ref }}" | |
| cancel-in-progress: true | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| paths: | |
| - "analyses/cell-type-ETP-ALL-03/Dockerfile" | |
| - "analyses/cell-type-ETP-ALL-03/.dockerignore" | |
| - "analyses/cell-type-ETP-ALL-03/renv.lock" | |
| - "analyses/cell-type-ETP-ALL-03/conda-lock.yml" | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - "analyses/cell-type-ETP-ALL-03/Dockerfile" | |
| - "analyses/cell-type-ETP-ALL-03/.dockerignore" | |
| - "analyses/cell-type-ETP-ALL-03/renv.lock" | |
| - "analyses/cell-type-ETP-ALL-03/conda-lock.yml" | |
| workflow_dispatch: | |
| inputs: | |
| push-ecr: | |
| description: "Push to AWS ECR" | |
| type: boolean | |
| required: true | |
| jobs: | |
| test-build: | |
| name: Test Build Docker Image | |
| if: github.event_name == 'pull_request' || (contains(github.event_name, 'workflow_') && !inputs.push-ecr) | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Build image | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: "{{defaultContext}}:analyses/cell-type-ETP-ALL-03" | |
| push: false | |
| cache-from: type=gha | |
| cache-to: type=gha,mode=max | |
| build-push: | |
| name: Build and Push Docker Image | |
| if: github.repository_owner == 'AlexsLemonade' && (github.event_name == 'push' || inputs.push-ecr) | |
| uses: ./.github/workflows/build-push-docker-module.yml | |
| with: | |
| module: "cell-type-ETP-ALL-03" | |
| push-ecr: true |