Get the Code to Work with Restarts Again

[aaronjridley]

Description

Addresses #103

When the cubesphere was fully implemented, the restarts stopped working. So, this was solved by no restarting the grid for cubespheres. That is sort of a hack, but there are so many variables that are calculated for the cubesphere that it doesn't make much sense to actually restart it.

Further, restarts have never worked without netCDF files. A reader for binary file containers is included in this pull. That solves the problem of the netCDFs.

Type of change

• Bug fix - cubesphere restart not working
• New feature - binary reader for containers

How Has This Been Tested?

In the tests/restart* directories, there are different tests for restarting the code.

Test configuration

• Operating system: Both Mac and Ubuntu
• Compiler, version number: gcc 13 (mac) and gcc 11 (ubuntu)
• I did not use netcdf files for any of the tests

Checklist:

• [N/A] Make sure you are merging into the develop (not master) branch
• My code follows the style guidelines of this project
• I have performed a self-review of my own code
• I have commented my code, particularly in hard-to-understand areas
• I have made corresponding changes to the documentation
• My changes generate no new warnings
• I have added tests that prove my fix is effective or that my feature works
• New and existing unit tests pass locally with my changes
• Any dependent changes have been merged and published in downstream modules
• [N/A] Add a note to CHANGELOG.md, summarizing the changes