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3mmaRand authored Feb 21, 2024
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Expand Up @@ -65,85 +65,30 @@ Tutor-led for Beginners: [Introduction to R and working with data](https://3mma
or
Supported learning for those with some R experience [Tidying data and the tidyverse including the pipe](https://3mmarand.github.io/pgr_reproducibility/slides/04_tidying_data_and_the_tidyverse.html)

1200 - 1245 Lunch
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Tutor-led for Everyone: [Project-oriented workflow](https://3mmarand.github.io/pgr_reproducibility/slides/03_rstudio_projects.html)

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Tutor-led for Everyone:[ R Markdown for Reproducible Reports](https://3mmarand.github.io/pgr_reproducibility/slides/06_r_markdown_for_reproducible_reports.html)
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Tutor-led for Everyone: Quarto for reproducible reporting

1430 - 1515 Tea and coffee break with Special Interests Group launch
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Continuation of Tutor-led for Everyone:[ R Markdown for Reproducible Reports](https://3mmarand.github.io/pgr_reproducibility/slides/06_r_markdown_for_reproducible_reports.html)




Continuation of Tutor-led for Everyone: Quarto for reproducible reporting


# Computing requirements

Laptops should have the following installed **prior** to attending attempting the materials.

- R version 4.0 or higher
- RStudio (1.4)
- OS-specific development tools as detailed below
- these packages from CRAN: `devtools`, `usethis`, `tidyverse`, `janitor`, `rticles`, `bookdown`, `tinytex`
- Once `tinytex` is installed, run: `tinytex::install_tinytex()`

## Installing R

Download the pre-compiled binary for your OS from https://cloud.r-project.org/ and install. More specifically:

**For Windows**

Click "Download R for Windows", then "base", then "Download R 4.x.x for Windows". This will download an `.exe` file; once downloaded, open to start the installation. You can accept all the defaults.

**For Mac**

Click "Download R for (Mac) OS X", then "R-4.x.x.pkg" to download the installer.
Run the installer to complete installation. You can accept all the defaults.

**For Linux**

Click "Download R for Linux". Instructions on installing are given for Debian, Redhat, Suse and Ubuntu distributions. Where there is a choice, install both `r-base` and `r-base-dev`.

## Installing R Studio

Download and install the version for your OS from: https://rstudio.com/products/rstudio/download/#download.
You can accept all the defaults.

**For Windows with no admin rights**

Download the `.zip` source archive under "Zip/Tarballs". Extract the files to a folder where you have write access, e.g. `C:\Users\username\RStudio`. In this folder, open the `bin` directory and find the RStudio program: it is named `rstudio.exe`, but the file extension will typically be hidden, so look for `rstudio`. Right-click this executable to create a desktop shortcut. Double-click the executable or use the shortcut to open.

## Development Tools
Some additional tools may be required to compile R packages from source.

**For Windows with no admin rights**

Download the latest (recommended) Rtools40 installer, Rtools.exe, from https://cran.r-project.org/bin/windows/Rtools/. Run the installer keeping the default settings.

**For Windows with admin rights**

Download the latest Rtools installer from https://cran.r-project.org/bin/windows/Rtools/. Run the installer making the following selections: keep the default settings for the installation location and components to install; check the box to add rtools to the system PATH.

**For Mac**

Install XCode. Either:

Download and install XCode from the Mac AppStore: http://itunes.apple.com/us/app/xcode/id497799835?mt=12
Within XCode go to Preferences : Downloads and install the Command Line Tools
Or for a smaller download size:

Register as an Apple Developer (free) here: https://developer.apple.com/programs/register/
Download the Command Line Tools for XCode appropriate for the version of OS X you are running from here: https://developer.apple.com/downloads/

**For Linux**

If you installed r-base-dev, when installing R, you should have all you need to build packages from source. Otherwise return to the instructions for installing R for your distribution and follow the instructions there to install the additional tools.
- R version 4.3.1 or higher: https://cloud.r-project.org/
- RStudio Version: 2023.12.1+402 or higher: https://posit.co/download/rstudio-desktop/
- Quarto v1.4.550 or higher: https://quarto.org/docs/get-started/
- Development Tools: [RTools (windows)](https://cran.r-project.org/bin/windows/Rtools/) or [xcode(mac)](http://itunes.apple.com/us/app/xcode/id497799835?mt=12)
- these R packages from CRAN: `devtools`, `usethis`, `tidyverse`, `janitor`
- quarto install tinytex

## Installing packages

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