error fix conflicts_prefer(GenomicRanges::setdiff)

3mmaRand · Oct 2, 2024 · 32a645e · 32a645e
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commit 32a645e
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diff --git a/transcriptomics/week-4/workshop.qmd b/transcriptomics/week-4/workshop.qmd
@@ -94,7 +94,7 @@ use a particular function.
 For example, to always use the **`dplyr`** version of `filter()` by default you can add this to the top of your script:
 
 ```{r}
-conflict_prefer("filter", "dplyr")
+conflicts_prefer(dplyr::filter)
 ```
 
 # Import 
@@ -233,6 +233,12 @@ write_csv(s30_fgf_only, "results/s30_fgf_only.csv")
 #---CODING ANSWER---
 library(DESeq2)
 ```
+We will also want to ensure that we are using the `setdiff()` function from the `GenomicRanges` package.
+
+```{r}
+conflicts_prefer(GenomicRanges::setdiff)
+```
+
 
 A DEseqDataSet object is a custom data type that is used by
 **`DESeq2`**. Custom data types are common in the Bioconductor[^1]

diff --git a/transcriptomics/week-5/workshop.qmd b/transcriptomics/week-5/workshop.qmd
@@ -88,8 +88,8 @@ I recommend you set the **`dplyr`** versions of `filter()` and `select()` to use
 🎬 Use the **`dplyr`** version of `filter()` by default:
 
 ```{r}
-conflict_prefer("filter", "dplyr")
-conflict_prefer("select", "dplyr")
+conflicts_prefer(dplyr::filter)
+conflicts_prefer(dplyr::select)
 ```