Merge pull request #83 from 2i2c-org/rebuild_researchdelight_image

refresh researchdelight image

images/researchdelight-image/Dockerfile

@@ -0,0 +1,20 @@
+FROM quay.io/jupyter/scipy-notebook
+
+USER root
+
+RUN apt-get -qq update && \
+    apt-get -qq install --yes --no-install-recommends \
+       gettext-base \
+       less \
+       unzip \
+       > /dev/null && \
+    apt-get -qq purge && \
+    apt-get -qq clean && \
+    rm -rf /var/lib/apt/lists/*
+
+# Install from the environment.yml file
+COPY --chown=${NB_UID}:${NB_GID} environment.yml /tmp/
+RUN mamba env update -n base --file /tmp/environment.yml && \
+    mamba clean --all -f -y && \
+    fix-permissions "${CONDA_DIR}" && \
+    fix-permissions "/home/${NB_USER}"

images/researchdelight-image/README.md

@@ -1 +1,3 @@
-A first attempt at building a user environment. Currently broken.
+This image is for internal 2i2c use for exploration of the open science ecosystem.
+
+It is a customization of the Jupyter Docker Stack [jupyter/scipy-notebook](https://jupyter-docker-stacks.readthedocs.io/en/latest/using/selecting.html#jupyter-scipy-notebook).

images/researchdelight-image/environment.yml

@@ -1,20 +1,9 @@
-name: researchdelight
-
 channels:
   - conda-forge
-
 dependencies:
-  - python=3.10
   - jupyter_contrib_nbextensions==0.5.1
-  # Required until https://github.com/jupyterhub/repo2docker/pull/1196 is merged
-  - jupyterhub-singleuser>=3.0,<4.0
-  # Required until https://github.com/jupyterhub/repo2docker/pull/1196 is merged
-  - jupyterhub-singleuser>=3.0,<4.0
   # nbgitpuller is very helpful when distributing user content
   - nbgitpuller
-  # Specify major version of jupyterlab to use. Manually bump it when you want to upgrade
-  # jupyterlab version
-  - jupyterlab>=3.0,<4.0
   # This provides memory usage stats on JupyterLab and classic notebook
   - jupyter-resource-usage
   # https://syncthing.net/ provides a dropbox-like interface for syncing directories across users,
@@ -24,6 +13,7 @@ dependencies:
   # https://blog.jupyter.org/securely-pushing-to-github-from-a-jupyterhub-3ee42dfdc54f has
   # some more information
   - gh-scoped-creds
+  - flake8
 
   # Cloud access tools and libraries
   # Access S3 easily from python
@@ -34,22 +24,11 @@ dependencies:
   # Access datasets exposed via STAC
   - pystac-client
 
-  # Visualization packages
-  - matplotlib
-  - ipympl # This enables matplotlib interaction with jupyter widgets
-  - ipyleaflet
-
-  # Geospatial data packages
-  - rasterio
-  - rioxarray
-  - xarray-datatree
-
-  # needed for Linux desktop to work
-  - websockify>=0.10
-
   # Not all packages will be available from conda-forge, we install from pip when we need to.
   - pip
   - pip:
       - jupyter-syncthing-proxy
       # Access linux desktop from inside JupyterHub
       - jupyter-desktop-server
+      # enable myst
+      - jupyterlab_myst