Bump rust-htslib from 0.47.0 to 0.48.0 #212

	name: Test

	on:
	pull_request:
	push:
	branches:
	- master

	env:
	CR_DENY_VERSION: 0.14.23
	RUST_VERSION: 1.79.0

	jobs:
	rust:
	runs-on: ubuntu-20.04
	steps:
	- name: Checkout git repository
	uses: actions/checkout@master
	- name: Checkout git submodules
	run: git submodule update --init --depth=1
	- name: Cache dependencies
	uses: Swatinem/rust-cache@v2
	- name: Install Rust
	uses: dtolnay/rust-toolchain@master
	with:
	toolchain: ${{env.RUST_VERSION}}
	components: rustfmt, clippy
	- name: Install cargo-deny
	run: \|
	mkdir -p ~/bin/
	curl -L "https://github.com/EmbarkStudios/cargo-deny/releases/download/${CR_DENY_VERSION}/cargo-deny-${CR_DENY_VERSION}-x86_64-unknown-linux-musl.tar.gz" \
	\| tar -xz -C ~/bin/ --strip-components=1 "cargo-deny-${CR_DENY_VERSION}-x86_64-unknown-linux-musl/cargo-deny"
	echo "$HOME/bin" >> "$GITHUB_PATH"
	- name: Check Rust formatting
	run: cargo fmt -- --check
	- name: Remove the Cargo target directory
	if: github.ref == 'refs/heads/master'
	run: cargo clean
	- name: Check dependency licenses
	run: cargo deny --locked check
	- name: Run clippy
	uses: 10XGenomics/clippy-check@main
	with:
	args: \|
	--all-targets --locked --
	-D clippy::perf
	-D clippy::style
	-D clippy::suspicious
	-A clippy::comparison_chain
	-W future_incompatible
	-W nonstandard_style
	-W rust_2021_compatibility
	-W unused
	-D clippy::enum_glob_use
	-D clippy::redundant_closure_for_method_calls
	-D clippy::unnecessary_unwrap
	-D clippy::unused_io_amount
	-D clippy::wildcard_imports
	-D clippy::blacklisted_name
	- name: Run Rust tests
	run: RUST_BACKTRACE=1 cargo test --locked

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