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I know there is a function in SeSame named estimateCellComposition which requires input as g for the reference methylation and q for the target measurement. You also stated that the reference methylation status matrix (rows for probes and columns for cell types) can be obtained by the getRefSet function. However, the getRefSet is only for the standard array. Based on your package, is there anything I could do to generate a reference methylation profile for my customized array for specific cell types or tissues?
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I know there is a function in SeSame named estimateCellComposition which requires input as g for the reference methylation and q for the target measurement. You also stated that the reference methylation status matrix (rows for probes and columns for cell types) can be obtained by the getRefSet function. However, the getRefSet is only for the standard array. Based on your package, is there anything I could do to generate a reference methylation profile for my customized array for specific cell types or tissues?
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