Code

fix: infer library type relationship#157

Code

Merged

balajtimate merged 15 commits intodevzavolanlab/htsinfer:devfrom fix_sra_mateszavolanlab/htsinfer:fix_sra_matesCopy head branch name to clipboardJan 21, 2024

+220-66

Commits

Commits on Dec 13, 2023

• refactor: compare alignments between mapped reads only

  balajtimate

  committed
  04fcab2

Commits on Jan 3, 2024

• fix: update get lib type test

  balajtimate

  committed
  455e983

• refactor: helper function for getlibtype

  balajtimate

  committed
  806420d

Commits on Jan 4, 2024

• feat: only map when lib source is inferred

  balajtimate

  committed
  782971a

Commits on Jan 5, 2024

• update tests

  balajtimate

  committed
  28284de

• fix orientation tests

  balajtimate

  committed
  dae137d

• fix orientation tests

  balajtimate

  committed
  bf7bea1

• refactor scripts

  balajtimate

  committed
  5f8f62d

Commits on Jan 8, 2024

• update get lib type and get read orient

  balajtimate

  committed
  1e992e1

• refactor get lib type

  balajtimate

  committed
  3fbaceb

• refactor: update get lib type and tests

  balajtimate

  committed
  70f4252

Commits on Jan 15, 2024

• refactor: update lib type and orientation

  balajtimate

  committed
  b5b80ca

Commits on Jan 17, 2024

• refactor: update concordant read counting, mapping

  balajtimate

  committed
  31af8ec

• update debug messages

  balajtimate

  committed
  b908930

Commits on Jan 18, 2024

• update comments in mapping

  balajtimate

  committed
  8fe0cbe