refactor: fix typos

zavolanlab · Nov 15, 2023 · c8a10e6 · c8a10e6
1 parent a71d757
commit c8a10e6
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Showing 3 changed files with 3 additions and 5 deletions.
diff --git a/htsinfer/exceptions.py b/htsinfer/exceptions.py
@@ -47,6 +47,4 @@ class CutadaptProblem(Exception):
 
 
 class UnsupportedSampleSourceException(Exception):
-    """Exception raised when taxonomy ID is not found in the source
-    organism list.
-    """
+    """Exception raised when taxonomy ID is not supported."""
diff --git a/htsinfer/get_library_source.py b/htsinfer/get_library_source.py
@@ -52,7 +52,7 @@ class GetLibSource:
         min_freq_ratio: Minimum frequency ratio between the first and second
             most frequent source in order for the former to be considered the
             library's source.
-        tax_id: Taxonomy ID of the organism.
+        tax_id: Taxonomy ID of the sample source.
     """
     def __init__(  # pylint: disable=E1101
         self,

diff --git a/htsinfer/models.py b/htsinfer/models.py
@@ -356,7 +356,7 @@ class Args(BaseModel):
         records: Number of input file records to process; set to `0` to
             process all records.
         threads: Number of threads to run STAR with.
-        tax_id: Taxonomy ID of the source organism.
+        tax_id: Taxonomy ID of the sample source.
         transcripts_file: File path to transcripts FASTA file.
         read_layout_adapter_file: Path to text file containing 3' adapter
             sequences to scan for (one sequence per line).