From 74c1387123f8bd81d41b9d13f55d6f891f90ce20 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Boris=20Juri=C4=8D?= <499542@mail.muni.cz>
Date: Wed, 13 Sep 2023 13:26:32 +0200
Subject: [PATCH] Test with tmpdir in MAPPING

---
 tests/test_get_library_type.py | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/tests/test_get_library_type.py b/tests/test_get_library_type.py
index ffbd7687..fd557905 100644
--- a/tests/test_get_library_type.py
+++ b/tests/test_get_library_type.py
@@ -121,6 +121,7 @@ def test_evaluate_mate_relationship_not_mates(self, tmpdir):
         CONFIG.args.tmp_dir = tmpdir
         MAPPING.paths = (FILE_IDS_NOT_MATCH_1, FILE_MATE_2)
         MAPPING.transcripts_file = FILE_TRANSCRIPTS
+        MAPPING.tmp_dir =tmpdir
         test_instance = GetLibType(config=CONFIG,
                                    mapping=MAPPING)
         test_instance.results.file_1 = StatesType.first_mate
@@ -139,6 +140,7 @@ def test_evaluate_split_mates_not_matching_ids(self, tmpdir):
         CONFIG.args.path_2_processed = FILE_IDS_NOT_MATCH_2
         CONFIG.args.tmp_dir = tmpdir
         MAPPING.paths = (FILE_IDS_NOT_MATCH_1, FILE_IDS_NOT_MATCH_2)
+        MAPPING.tmp_dir = tmpdir
         test_instance = GetLibType(config=CONFIG,
                                    mapping=MAPPING)
         test_instance.evaluate()