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WGBS-cfDNA

Scripts for the alignment and analysis of whole genome bisulfite sequencing data from cell-free DNA

wgbs_cfDNA_alignment_calling.sub

  1. Fastqc & and trimming
  2. bismark alignment
  3. bismark deduplicate
  4. bismark methylation exctractor
  5. bismark report

deifning_mC_kmers.sh