cellAnno provide function to annotate single cell at cluster level using reference built from multiple sources (Tabula sapiens, human protein atlas, ImmGen and GEO). It includes epithelial cell types from 43 human tissues. It can also be used to make Cell-of-Origin (COO) prediction from bulk RNA-seq data of tumor samples (solid cancer types).
Installation
devtools::install_github("yupingz/cellAnno")
Functions
Type ?cellAnno and ?cooPredict to see help information