prepare_h5_data() function not as it should be

[nazib]

Hi
Thanks for sharing your nice work. I tried to train your model on our tissue cleared dataset but unfortunately the prepare_h5_data() function is not creating 64x64x64 patches. I debugged code and realised that its creating ROI's and patches with the same size of the given image.
Could you please explain where the problem is?
I debugged it on two files "training_axial_crop_pat0.nii.gz" and "training_axial_crop_pat0-label.nii.gz" with the size 141x127x207. The generated patches are also the same size. Shouldn't the patches be 64x64x64?
regards