GCN-on-Molecular-Subtype

This is the code for our paper, Cancer molecular subtype classification by graph convolutional networks on multi-omics data. Paper

Set up

Major dependencies are listed in the requirements.txt file

Data

All the data needed can be downloaded from the Google drive. Data Folder

Run the code

## Run a single omic (expression) model with 1000 genes (with singletons) and BioGrid network
python3 main.py --num_gene 1000