forked from crazyhottommy/pyflow-ATACseq
-
Notifications
You must be signed in to change notification settings - Fork 0
/
cluster.json
107 lines (107 loc) · 1.76 KB
/
cluster.json
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
{
"__default__" :
{
"time" : "00:15",
"cpu": 1,
"email" : "[email protected]",
"EmailNotice": "N",
"MaxMem": 16384,
"queue" : "short"
},
"merge_fastqs" :
{
"time" : "4:00",
"cpu" : 1,
"queue": "medium"
},
"fastqc":
{
"time" : "2:00",
"cpu" : 1,
"queue" : "medium"
},
"trim_adapter":
{
"time" : "24:00",
"cpu" : 1,
"queue" : "medium"
},
"align":
{
"time" : "12:00",
"MaxMem": 32768,
"cpu" : 5,
"queue" : "medium"
},
"sort_bam":
{
"time" : "01:00",
"MaxMem": 32768,
"cpu" : 5
},
"index_bam":
{
"time" : "00:30"
},
"flagstat_bam":
{
"time" : "00:30"
},
"phantom_peak_qual":
{
"time": "03:00",
"cpu" : 4,
"queue": "medium"
},
"flagstat_chrM_exclude_bam":
{
"time" : "00:30"
},
"down_sample":
{
"time" : "2:00",
"MaxMem": 32768,
"cpu" : 5,
"queue" : "medium"
},
"call_peaks_macs2":
{ "time" : "03:00",
"queue" : "medium"
},
"make_bigwigs":
{
"time" : "03:00",
"MaxMem": 32768,
"cpu" : 5,
"queue" : "medium"
},
"multiQC" :
{
"time" : "00:10"
},
"ataqv":
{
"time": "01:00"
},
"json_to_html":
{
"time": "00:30"
},
"remove_chrM_bam":
{
"time": "02:00",
"cpu": 5,
"queue" : "medium"
},
"make_bed_nucleoATAC":
{
"time": "00:10"
},
"nucleoATAC":
{
"time": "12:00",
"MaxMem": 32768,
"cpu" : 5,
"queue" : "medium"
}
}