Code

Neo4jv5#79

Code

Merged

yuanzhou merged 26 commits intodev-integratex-atlas-consortia/hs-ontology-api:dev-integratefrom neo4jv5x-atlas-consortia/hs-ontology-api:neo4jv5Copy head branch name to clipboardApr 15, 2024

+1,170-225

Commits

Commits on Jan 19, 2024

• Updated neo4j in requirements.txt

  ChuckKollar

  committed
  33859ad

Commits on Jan 26, 2024

• Changed to Neo4J v5, fixed depreceted cyphers, added test information.

  ChuckKollar

  committed
  f78d318

Commits on Feb 1, 2024

• Added src/compare_responses.py which allows the user to compare responses from two servers

  ChuckKollar

  committed
  982476f

Commits on Feb 2, 2024

• updated DIFFERENCES_PROCESSED > ENDPOINTS_PROCESSED

  ChuckKollar

  committed
  3b792b9

Commits on Mar 12, 2024

• Create python-app.yml

  DerekFurstPitt

  authored
  83686c4

Commits on Mar 13, 2024

• Merge pull request #83 from x-atlas-consortia/Derek-Furst/setup-python3.9

  Show description for 989ebc2
  yuanzhou

  authored
  989ebc2

• enhancement: field_* endpoints account for changes to CEDAR and CEDAR_ENTITY data.

  AlanSimmons

  committed
  e336c24

Commits on Mar 14, 2024

• renamed application parameter in field-entities to application_context

  AlanSimmons

  committed
  e5b0c5c

• renamed application parameter in field-entities to application_context

  AlanSimmons

  committed
  53b7bab

• updates to test script

  AlanSimmons

  committed
  2394ff4

Commits on Mar 18, 2024

• Bump version to 1.4.11

  yuanzhou

  authored
  68077f0

• updates to test script

  AlanSimmons

  committed
  d4d9387

Commits on Mar 21, 2024

• Merge pull request #86 from x-atlas-consortia/simmons/13mar

  Show description for 50fdac2
  yuanzhou

  authored
  50fdac2

Commits on Mar 26, 2024

• Removed /status endpoint as it is interited from ubkg-api

  ChuckKollar

  committed
  78016b4

Commits on Apr 8, 2024

• Updated documentation to reflect working with local or branched version of ubkg-api; moved testing scripts

  AlanSimmons

  committed
  75c4242

Commits on Apr 9, 2024

• gitignore to ignore any files generated by prototype cells_index script

  AlanSimmons

  committed
  ffbbf2f

• Refactored test script to write to output file.

  AlanSimmons

  committed
  b739eb2

• Bug fixes in genedetail.cypher: 1. HRA changed label for "has_marker_component" to "characterized_by" 2. Exception for case of invalid input parameter--i.e., invalid HGNC symbol or code

  AlanSimmons

  committed
  3551b30

• Bug fixes in celltypedetail.cypher: 1. HRA changed label for "has_marker_component" to "characterized_by" 2. Converted initial subquery from using CODE to CodeID to allow for CL Codes with leading …

  Show description for d65918b
  AlanSimmons

  committed
  d65918b

Commits on Apr 12, 2024

• Merge pull request #87 from x-atlas-consortia/simmons/03apr2024/neo4jv5

  Show description for 15820c5
  yuanzhou

  authored
  15820c5

• Bump version to 2.0.0

  yuanzhou

  authored
  edc772f

• Update hs-ontology-api-spec.yaml version to 2.0.0

  yuanzhou

  authored
  4197afb

• Increase to 4 workers and enable multi-threading

  yuanzhou

  committed
  cc52031

• Sync with latest main

  yuanzhou

  committed
  8501d7b

• Update requirements.txt to use ubkg-api 2.1.1

  yuanzhou

  authored
  98357b0

• Install ubkg-api2.1.1

  yuanzhou

  authored
  80bd722