From b5ce46bc5092007efaf8fe966ff47f157b2c86c4 Mon Sep 17 00:00:00 2001 From: jpuerto-psc <68066250+jpuerto-psc@users.noreply.github.com> Date: Thu, 22 Aug 2024 10:21:34 -0400 Subject: [PATCH] Update assayclasses.json --- dev/assayclasses.json | 37 +++++++++++++++++++++++++++++++++++++ 1 file changed, 37 insertions(+) diff --git a/dev/assayclasses.json b/dev/assayclasses.json index 3a2b380..b2227cc 100644 --- a/dev/assayclasses.json +++ b/dev/assayclasses.json @@ -5207,5 +5207,42 @@ "is_sc" ] } + }, + { + "rule_description": { + "application_context": "HUBMAP", + "code": "C202010", + "name": "derived salmon_rnaseq_10x json-based" + }, + "value": { + "active_status": "active", + "asssaytype": "salmon_rnaseq_10x", + "dataset_type": { + "PDR_category": "RNA Sequencing", + "dataset_type": "RNAseq", + "fig2": { + "aggregated_assaytype": null, + "category": "bulk", + "modality": "Transcriptomics" + } + }, + "description": "scRNAseq (10x Genomics) [Salmon]", + "dir_schema": null, + "is_multiassay": false, + "measurement_assay": { + "codes": [], + "contains_full_genetic_sequences": false + }, + "must_contain": [], + "pipeline_shorthand": "Salmon", + "process_state": "derived", + "provider": "IEC", + "tbl_schema": null, + "vitessce_hints": [ + "rna", + "is_sc", + "json_based" + ] + } } ]